Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., 3'-to-5' exoribonuclease RNase R from Variovorax sp. SCN45

 Score =  574 bits (1480), Expect = e-168
 Identities = 332/762 (43%), Positives = 451/762 (59%), Gaps = 49/762 (6%)

Query: 86  LEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGDFVLVQPSGTDKRGRKE 145
           L+  +G V GH+DGHG+V+ +     E DI LP ++MR ++H D V  +    D+RGR E
Sbjct: 20  LDEFEGTVQGHRDGHGFVQRDDG---EADIYLPPNEMRAVLHKDRVKARVVRQDRRGRPE 76

Query: 146 GRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPNDLRAGARMGNVVVIEITD 205
           GR+V I+E     I+GR   E G   V P+D R   D+LIP      A++G VVV+++T+
Sbjct: 77  GRVVEIVERSEQPIIGRLLHEGGIWLVAPEDKRYGQDVLIPKGATGPAKVGQVVVVQLTE 136

Query: 206 RGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAEVEQQVAGLTEEVPEEAKQ 265
                   +G+V EVLGE   PGME +IA+R + +PHE+ AE   +   L E+V    K+
Sbjct: 137 PPALFGQPVGRVKEVLGEIDDPGMEIEIAVRKYGVPHEFSAECLAEAKALPEKVRPADKK 196

Query: 266 GRVDLRALPLVTIDGEDARDFDDAVYCEAKK---GGGWRLWVAIADVSYYVRPDTALDKE 322
           GRVDL  +PLVTIDGEDARDFDDAVYCE  K   G GWRL VAIADVS YV+  + +D +
Sbjct: 197 GRVDLTDIPLVTIDGEDARDFDDAVYCEPAKVGRGKGWRLLVAIADVSAYVQTGSGIDID 256

Query: 323 AINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGKLSGYKHYEAVM 382
           A +R  SVYFP +V+PMLPE LSNGLCSLNP+V+RLCMVC+M V+  G++  Y+ Y AVM
Sbjct: 257 AYDRATSVYFPRRVIPMLPEKLSNGLCSLNPEVERLCMVCDMLVAADGEIYAYQFYPAVM 316

Query: 383 NSHARLTYTKVHEIL---EGDEELRERYKALVPHLEELHKMYQVLKSARDERGAIEFETV 439
            SHAR TYT+V  IL    G E  + + +  V  L  L  +Y+ L   R +RGA++FET 
Sbjct: 317 FSHARFTYTEVAAILGNTRGPEAAKRKDR--VKDLLNLADVYKALLKQRGKRGAVDFETT 374

Query: 440 ETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYRVHEPPGEE 499
           ET+ I +   +IE I P  RN+AH+LIEE M+ AN+ SA  + + K   L+RVHE P  E
Sbjct: 375 ETQIICDDAGRIEKIVPRTRNEAHRLIEEAMLAANVCSADFIAEGKHPGLFRVHEGPTPE 434

Query: 500 RLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLLRSMKQAVYNADN 559
           +    R +L  +G+ LS   +P P ++  + +   ERPD + I TMLLRSM+QA+Y   N
Sbjct: 435 KKEILRGYLKAMGVGLSITDDPKPGEFQAIAEATKERPDAQQIHTMLLRSMQQAIYTPIN 494

Query: 560 AGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPTGGYHYS------ 613
           +GHFGLA + Y HFTSPIRRYPDLL+HR IK ++ K   R Q    PT G  ++      
Sbjct: 495 SGHFGLAYEAYTHFTSPIRRYPDLLVHRVIKAILGKT--RYQLPMLPTPGEAHAKLAKRL 552

Query: 614 ---------------------FDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVG 652
                                    +  G  CS  ERRAD+A+R+V  WLKC+YM++H+G
Sbjct: 553 ASRVKAPTNKPQKATVAPSKEVLAWEAAGLHCSANERRADEASRDVEAWLKCKYMREHLG 612

Query: 653 EELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGD 712
           EE  GVV   T+FG FV L  ++++GLVHI+ L  +Y+ +D + Q L GE  G  Y +G 
Sbjct: 613 EEYGGVVTAATTFGIFVTLDAMYVEGLVHITELGGEYFKFDEMRQELRGERTGIRYAIGT 672

Query: 713 AVKVKVLAVNLDDRQIDFELVETSRKLRGQGKTAKKRAD-----EARAKAQGKKEAATKG 767
            V+V+V  V+LD R+IDF LV    +L  +    K  A      +A AK   + +AA  G
Sbjct: 673 RVRVQVSRVDLDGRKIDFRLVREGEELMARAMKDKGAASSGVPVKASAKRGTRHKAAEAG 732

Query: 768 A---CGKSPTKSELKPQVEATRRPDSEGRSKPKKTKAPKKRK 806
                G+  T +   PQ  A +   S  +    K K  K R+
Sbjct: 733 GGEPRGERGTSASAGPQ-SAMQAFKSAVKKAANKMKGRKPRR 773