Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 857 a.a., exoribonuclease R from Pseudomonas putida KT2440

 Score =  778 bits (2009), Expect = 0.0
 Identities = 427/854 (50%), Positives = 553/854 (64%), Gaps = 40/854 (4%)

Query: 1   MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR 60
           M+D   LDP A REA+ YDNPIPSRE IL+ L     P  R +L +   L  E+Q E LR
Sbjct: 1   MADWQSLDPEAAREAEKYDNPIPSRELILQRLADRGEPAAREELAKEFGLYEEDQIEALR 60

Query: 61  RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH 120
           RRLRAMERDGQL++TRR  YA  +KL+++ G V GH+DG G++ P+       D+ L   
Sbjct: 61  RRLRAMERDGQLIYTRRGTYAPVDKLDLICGRVSGHRDGFGFLIPDDGSE---DLFLSPS 117

Query: 121 QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH 180
           QMR +  GD  L + SG D+RGR+EG LV ++   +  +VGR+F E G  YV PD+ +I 
Sbjct: 118 QMRLVFDGDRGLARVSGVDRRGRREGVLVEVISRAHESVVGRYFEEGGIGYVTPDNPKIQ 177

Query: 181 HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI 240
            ++L+      GA++G  V I+IT   T      G VVEV+G  MAPGME  +A+R++ I
Sbjct: 178 QEVLVTAGRNGGAKIGQFVEIKITHWPTPRFQPQGDVVEVIGNYMAPGMEIDVALRSYDI 237

Query: 241 PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKK---- 296
           PH WP +V ++      EV E+ K+ RVDLR LP VTIDGEDARDFDDAVYCE       
Sbjct: 238 PHVWPNDVVKEARKFRSEVEEKDKEKRVDLRHLPFVTIDGEDARDFDDAVYCEPLGKLRL 297

Query: 297 -GGGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQV 355
             GGWRL+VAIADVS YVR  +ALD EA  RGNSVYFP +VVPMLPE LSNGLCSLNP V
Sbjct: 298 FSGGWRLYVAIADVSSYVRLGSALDVEAQQRGNSVYFPERVVPMLPEELSNGLCSLNPHV 357

Query: 356 DRLCMVCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGD-----EELRERYKAL 410
           DRL MVCEMT+++ G++  Y+ YE V++SHARLTY KV  +LE       + LRE YK +
Sbjct: 358 DRLAMVCEMTMNKAGQMVDYQFYEGVIHSHARLTYNKVSSMLEHSRTREGKALREEYKEV 417

Query: 411 VPHLEELHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECM 470
           VP L+ L+ +Y+VL  AR  RGAI+FET ET+ IF  +RKI  I P VRNDAHKLIEECM
Sbjct: 418 VPDLKNLYNLYKVLVEARHTRGAIDFETQETRIIFGEERKIAEIRPTVRNDAHKLIEECM 477

Query: 471 ILANIASASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLM 530
           + AN+A+A  ++K    ALYRVH+ P  ERL   R FLGELGL L  G +PSP DY  L+
Sbjct: 478 LAANVATAEFLQKHGVPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDPSPKDYQALL 537

Query: 531 KQIGERPDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIK 590
             I  RPD  LIQT++LRS+ QAVY+ +N GHFGL  + Y HFTSPIRRYPDLL+HRAI+
Sbjct: 538 ASIAGRPDFHLIQTVMLRSLSQAVYSTENNGHFGLNYEAYTHFTSPIRRYPDLLVHRAIR 597

Query: 591 YLIAKQEGRNQDRWTPTGG------YHYSFDDMDFYGEQCSMTERRADDATREVSDWLKC 644
            +I  +      +            Y Y  + ++  GEQCSMTERRAD+ATR+V +WLKC
Sbjct: 598 SIIRSKVDTPHVKRAGAMSIPKARIYPYDENTLEQLGEQCSMTERRADEATRDVVNWLKC 657

Query: 645 EYMQDHVGEELEGVVANVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESF 704
           E+M+D VGE   GV+  VT FG FV LT+++++GLVH+S L  DYYH+DP+  RL GE  
Sbjct: 658 EFMKDRVGETFPGVITAVTGFGLFVELTDIYVEGLVHVSALPGDYYHFDPVHHRLAGERT 717

Query: 705 GAIYRLGDAVKVKVLAVNLDDRQIDFELVETS------RKLRGQGKTAKKR----ADEAR 754
           G  +RLGD ++VKV+ V+LD+R+IDFE+ E +      RK RG    A+K     A EA+
Sbjct: 718 GRSFRLGDTIEVKVMRVDLDERKIDFEVSEKTLAAPIGRKQRGAAPVAEKAEQQPATEAK 777

Query: 755 A--KAQGKKEAATKGACGKSPTK--SELKPQVEATRRPDSEGR----SKPKKTKAPKKRK 806
           A  K + +K  A++    K   +  +E++   E  +   ++ R    SK +K   P  + 
Sbjct: 778 ATPKPRSRKSEASEAYFPKDAVQRNAEVRKSREMKKALMTDARSSAGSKSEKGGKPSGKP 837

Query: 807 DQARK---KSGKVR 817
            + RK   KSG  R
Sbjct: 838 TKHRKGPPKSGAPR 851