Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., Exoribonuclease II (EC 3.1.13.1) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 48.5 bits (114), Expect = 1e-09
 Identities = 80/345 (23%), Positives = 126/345 (36%), Gaps = 64/345 (18%)

Query: 251 QVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVS 310
           Q   + EE+P         L  +   +ID     + DDA+  +    G   L + IA   
Sbjct: 228 QAPAIAEELP---------LAPVQAFSIDDSQTTEIDDALSLQGLGSGSVTLGIHIAAPG 278

Query: 311 YYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLN----PQVDRLCMVCEMTV 366
             V P+  +D+ A  R ++VY P   + MLP+ +      +     P V       E T+
Sbjct: 279 LAVAPEGPIDQVARTRLSTVYMPGHKITMLPDDVVQAYTLMAGRDCPAVSLYVSFDEATL 338

Query: 367 SETGKLSGYKHYEAVMN-SHARLTYTKVHEILEGDE---ELRERYKALVPHLEELHKMYQ 422
           + TG  +  +     +N  H +L        L G+    E      AL P L  L ++  
Sbjct: 339 TVTGSRTALERVPIALNLRHDQLDTVITEAWLAGEAPTGEAPAEIAALQPSLAFLFRLAL 398

Query: 423 VLKSARD-ERGAIE-FETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASL 480
            LK+ R+  RG  E F   +  F      ++E +                          
Sbjct: 399 HLKAQREVVRGKPENFTRPDYTF------RLEGVSG------------------------ 428

Query: 481 VEKAKEAALYRVHEPPGEER-LTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDK 539
                        EP G+ER L G R     L L ++  +  + + + N +   G  P  
Sbjct: 429 ------------DEPQGDERVLIGTRKRGAPLDLMVAEAMILANSTWGNWLADCGV-PGI 475

Query: 540 ELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLL 584
              Q  L   +K  +       H G+ +K YA  TSP+RRY DL+
Sbjct: 476 YRSQASLQPGIKVRM-GTKAQPHAGIGVKSYAWSTSPLRRYVDLV 519