Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 825 a.a., Ribonuclease R from Methylophilus sp. DMC18

 Score =  725 bits (1872), Expect = 0.0
 Identities = 384/824 (46%), Positives = 521/824 (63%), Gaps = 26/824 (3%)

Query: 8   DPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAME 67
           DP A REA+ Y  P+PSRE +L+ L+   +P++   ++  L +  +E+ +   RRL AME
Sbjct: 14  DPQAQREAELYQTPLPSRELVLQLLSDQGIPLSAEQIYVMLDISHDER-DIFNRRLGAME 72

Query: 68  RDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIH 127
           RDGQL+  R+  + LP+K+ ++ G V GH DG+G++ P+       DI L   +M  ++H
Sbjct: 73  RDGQLMRNRKGAFCLPDKIHLIAGTVFGHTDGYGFLVPDDKTKNPEDIFLGPKEMTLVMH 132

Query: 128 GDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPN 187
           GD  +V+ +G D+RGR EG+LV +LE  N  +VGR     G + V  +D RI  DILIP 
Sbjct: 133 GDRAMVRLAGMDRRGRPEGKLVEVLERANKTLVGRVIRAQGVTIVAAEDKRISQDILIPY 192

Query: 188 DLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAE 247
            L   A++G VV +E+T+  + +   MGK+VE+LG     GME +IA+R H +PH++   
Sbjct: 193 HLDMDAQVGQVVTVELTEYPSSHSNPMGKIVEILGNYADSGMEIEIALRKHHLPHQFNPA 252

Query: 248 VEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIA 307
             +Q     + V  +  +GR DLR L L+TIDGE ARDFDDAV+ E + G GWRL VAIA
Sbjct: 253 ALKQAEDFPKTVQAKDYKGRKDLRDLALITIDGETARDFDDAVFAEPQ-GKGWRLVVAIA 311

Query: 308 DVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 367
           DVS+YV+P  ALDKEA +RGNSVYFP +V+PMLPE LSNGLCSLNP V+RLCMVC+M V 
Sbjct: 312 DVSFYVQPGDALDKEAFDRGNSVYFPRRVIPMLPEALSNGLCSLNPDVERLCMVCDMQVD 371

Query: 368 ETGKLSGYKHYEAVMNSHARLTYTKVHEILEG-DEELRERYKALVPHLEELHKMYQVLKS 426
             G +  Y+ Y +VM S AR+TYTKV  +L+G D  L E Y  L+PHL+ L+ +++++ +
Sbjct: 372 GQGVVKQYQFYPSVMRSKARMTYTKVAALLQGEDAALSEEYTWLLPHLQNLNSVFRLMLT 431

Query: 427 ARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKE 486
            R++RGA+EFE+ ET  +FN   KI+ I PVVRNDAHKLIEECM+ AN+ +A  + K ++
Sbjct: 432 QREKRGAVEFESTETMMVFNDNGKIDKIVPVVRNDAHKLIEECMLAANVCAADFLLKNEQ 491

Query: 487 AALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTML 546
             L+R+HE P  E+L   R F+GE G  + GG  P   DYA LM++I ERPD +L+QT+L
Sbjct: 492 TCLFRIHEGPTPEKLEALRLFMGEFGFGVGGGESPHAKDYAKLMQRIKERPDAQLLQTVL 551

Query: 547 LRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTP 606
           LRSM+QAVY+ DN GHFGLA + Y HFTSPIRRYPDLL+HRAIK ++             
Sbjct: 552 LRSMQQAVYSPDNVGHFGLAYEAYTHFTSPIRRYPDLLVHRAIKAVVE------------ 599

Query: 607 TGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFG 666
             G  Y   D    G  CSMTERRADDATR+V++WLKC YMQD VGE   G VA VTSFG
Sbjct: 600 --GKRYQAKDWHHLGVHCSMTERRADDATRDVTNWLKCFYMQDKVGEVFSGTVAGVTSFG 657

Query: 667 FFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDR 726
            FV L E++++GL+H++ L NDY+ +D     +VGE  G  YRLGD + VKV+ V+L+  
Sbjct: 658 LFVALDEVYVEGLLHVTDLGNDYFIHDKARHEMVGERTGVRYRLGDRLTVKVVRVDLETT 717

Query: 727 QIDFELVETSRKL--RGQGKTAKKRADEARAKAQGKKEAATKGACGKSPTKSELKPQVEA 784
           +IDF LV  S  +     G  A+  A  +  K +  K             K+  +P  ++
Sbjct: 718 RIDFTLVGKSEGVVDPADGTVAESLAVSSVKKTRSAKPVEKVVPAVWEAPKTAKQPAKKS 777

Query: 785 TRRPDSEGRSKPKKTKAPK-------KRKDQARKKSGKVRDKTK 821
           TR   S  RS   K  A K         KD+ R  + K + K K
Sbjct: 778 TRSGTSTPRSAADKPAASKPAPARSRSAKDKGRHSAQKNKGKPK 821