Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 812 a.a., '3'-to-5' exoribonuclease RNase R' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1029 bits (2661), Expect = 0.0
 Identities = 513/811 (63%), Positives = 625/811 (77%), Gaps = 21/811 (2%)

Query: 8   DPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAME 67
           DPF +REA+ Y NPIPSRE+ILE LT+   P +R +L   L +EGEEQ E LRRRLRAME
Sbjct: 4   DPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVELNIEGEEQLEALRRRLRAME 63

Query: 68  RDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIH 127
           RDGQLVFTRRQCYALPE+L+++KG VIGH+DG+G++R EG   ++ D+ L   QM+T IH
Sbjct: 64  RDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVEG---RKDDLYLSSEQMKTCIH 120

Query: 128 GDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPN 187
           GD VL QP G D++GR+E R+VR+L  +  QIVGR+F + G  +VVPDDSR+  DILIP 
Sbjct: 121 GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDAGVGFVVPDDSRLSFDILIPP 180

Query: 188 DLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWPAE 247
           +   GARMG VVV+E+T R TR    +GK+VEVLG+NM  GM   +A+RTH+IP+ WP  
Sbjct: 181 EDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDMALRTHEIPYIWPQA 240

Query: 248 VEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIA 307
           VEQQVAGL EEVPEEAK GRVDLR LPLVTIDGEDARDFDDAVYCE K+GGGWRLWVAIA
Sbjct: 241 VEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA 300

Query: 308 DVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVS 367
           DVSYYVRP T LD+EA NRG SVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMT+S
Sbjct: 301 DVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTIS 360

Query: 368 ETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSA 427
             G+L+GYK YEAVM+SHARLTYTKV  +L+GD++LRE+Y  LV H+EELH +Y+VL  A
Sbjct: 361 AKGRLTGYKFYEAVMSSHARLTYTKVWHMLQGDQDLREQYAPLVKHIEELHNLYKVLDKA 420

Query: 428 RDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEA 487
           R+ERG I FE+ E KFIFNA+R+IE IE   RNDAHKLIEECMI+ANI++A  VEKAKE 
Sbjct: 421 REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMIMANISAARFVEKAKEP 480

Query: 488 ALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELIQTMLL 547
           AL+R+H+ P  E +T FR  L ELGL+L GG +P P DYA L++ I +RPD E++QTMLL
Sbjct: 481 ALFRIHDKPTTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESIADRPDAEMLQTMLL 540

Query: 548 RSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQDRWTPT 607
           RSMKQA+Y+ +N GHFGLAL+ YAHFTSPIRRYPDL LHRAIKYL+AK++G N+   T T
Sbjct: 541 RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLSLHRAIKYLLAKEQG-NKGNTTET 599

Query: 608 GGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVANVTSFGF 667
           GGYHYS ++M   G+ CSM ERRAD+ATR+VSDWLKC++M D VG   +GV+A+VT FGF
Sbjct: 600 GGYHYSMEEMLQLGQHCSMAERRADEATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGF 659

Query: 668 FVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAVNLDDRQ 727
           FVRL EL IDGLVH+S+L NDYY +D +GQRL+GES G  YRLGD V+V+V AVN+D+R+
Sbjct: 660 FVRLDELFIDGLVHVSSLDNDYYRFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERK 719

Query: 728 IDFELVETSRKLRGQGKTAKKRADEARAKAQGKKEAATKGACGKSPTKSELKPQVEATRR 787
           IDF L+ + R  R  GKTA+++A +  +K  GK+    K                +    
Sbjct: 720 IDFSLISSERAPRNVGKTAREKAKKGESKNAGKRRQVGK----------------KVNFE 763

Query: 788 PDSEGRSKPK-KTKAPKKRKDQARKKSGKVR 817
           PDS  R + K K KA KK   +A+K S K +
Sbjct: 764 PDSAFRGEKKAKPKAAKKDARKAKKPSAKTQ 794