Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 644 a.a., Exoribonuclease II (EC 3.1.13.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  153 bits (387), Expect = 3e-41
 Identities = 159/679 (23%), Positives = 286/679 (42%), Gaps = 57/679 (8%)

Query: 66  MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125
           M +D  L+   +Q   L  +    +G V   + G G++     ++ +    +P  QM+ +
Sbjct: 1   MFQDNPLLAQLKQ--QLHSQTPRAEGVVKATEKGFGFLE----VDAQKSYFIPPPQMKKV 54

Query: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDIL- 184
           +HGD + V    T+K  R+      ++E    + VG+   +     +VPD     H +L 
Sbjct: 55  MHGDRI-VAVIHTEKE-RESAEPEELIEPFLTRFVGKVQGKNDRLSIVPD-----HPLLK 107

Query: 185 --IPNDLRAGA----RMGNVVVIEITDRGTR-NRGMMGKVVEVLGENMAPGMETQIAIRT 237
             IP     G     + G+  V E+     + +R     + + +       +   + +  
Sbjct: 108 DAIPCRAARGVQHEFKEGDWAVAEMRRHPLKGDRSFYADLTQYITFADDHFVPWWVTLAR 167

Query: 238 HQIPHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG 297
           H +  E P        G+  E+ +E  + R DL AL  VTID     D DDA+Y E    
Sbjct: 168 HNLEKEAPN-------GVATEMLDEGLE-RQDLTALNFVTIDSASTEDMDDALYAEELAD 219

Query: 298 GGWRLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDR 357
           G  +L VAIAD + ++   + LD  A  R  + Y P   +PMLP  LS+ LCSL     R
Sbjct: 220 GRLQLTVAIADPTAWIAEGSKLDNTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRANEVR 279

Query: 358 LCMVCEMTVSETGKL-SGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEE 416
             + C M ++  G +      + A + S A+L Y  V + LE +   +   + +   +  
Sbjct: 280 PALACRMIIAADGTIDDDIAFFAATIESKAKLAYDNVSDWLENNGTWQPDNEGIAQQIRL 339

Query: 417 LHKMYQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIA 476
           LH++       R     +  +  + +F+   + ++  I    R  A++++EE MI AN+ 
Sbjct: 340 LHRICLSRSEWRHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEESMIAANLC 399

Query: 477 SASLVEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGER 536
           +A ++       +Y VH              L   GL +      +   +  L +++  +
Sbjct: 400 AARVLRDKLGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFCKLRRELDAQ 459

Query: 537 PDKELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQ 596
           P    + + + R    A  + +   HFGL L+ YA +TSPIR+Y D++ HR +K +I  +
Sbjct: 460 P-SGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKAVIKGE 518

Query: 597 E-GRNQDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVG--E 653
              R Q+  T                +Q +   R    A R+V DWL   ++ D  G   
Sbjct: 519 AIARPQEDIT----------------QQMAERRRLNRMAERDVGDWLYARFLNDKAGTNT 562

Query: 654 ELEGVVANVTSFGFFVRLTELHIDGLV---HISTLANDYYHYDPIGQ-RLVGESFGAIYR 709
                + +V+  G  VRL +      +    +  + ++       G  ++ GE+   +Y+
Sbjct: 563 RFAAEIIDVSRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGET---VYK 619

Query: 710 LGDAVKVKVLAVNLDDRQI 728
           + D + V +  V ++ R I
Sbjct: 620 VTDVIDVTIAEVRMETRSI 638