Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., exoribonuclease II from Erwinia tracheiphila SCR3

 Score =  175 bits (443), Expect = 8e-48
 Identities = 179/674 (26%), Positives = 297/674 (44%), Gaps = 74/674 (10%)

Query: 82  LPEKLEM----VKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTLIHGDFVLVQPSG 137
           L EKL      V+G V G + G G++     ++ +    +P   M+ ++HGD V V    
Sbjct: 11  LKEKLHSQTPRVEGVVKGTEKGFGFLE----VDPQKSYFIPPPFMKKVMHGDRV-VAVLQ 65

Query: 138 TDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILIPND--LRAGARM 195
           TDK  R+      ++E    + VGR   +     +VPD   +   I    D  L+   + 
Sbjct: 66  TDK-DREVADPETLVEPFLSRFVGRIQKKDDRLSIVPDHPLLKDAIQCRADRNLKHDFQN 124

Query: 196 GNVVVIEITDRGTR-NRGMMGKVVEVL---GENMAPGMETQIAIRTHQIPHEWPAEVEQQ 251
           G+  V E+     + +R    ++   +    +++AP   T   +  H +  E P      
Sbjct: 125 GDWAVAEMRRHPLKGDRTFYAELTAFVTKGDDHLAPWWVT---LSRHNLEREAPE----- 176

Query: 252 VAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRLWVAIADVSY 311
             G+  E+ +E    R DL AL  VTID     D DDA+Y E    G   L +AIAD + 
Sbjct: 177 --GVAVEMIDE-NLTREDLTALEFVTIDSASTEDMDDALYVEETADGELSLTIAIADPTA 233

Query: 312 YVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSETGK 371
           YV   + LD  A  R  + Y P   +PMLP  LS+ +CSL P   R  M C +TV++ G 
Sbjct: 234 YVAAGSPLDDIAAQRAFTNYLPGFNIPMLPRQLSDDVCSLRPHQRRPVMACRVTVADDGS 293

Query: 372 LSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQVLKSARDER 431
           +     + A + S A+L Y  V + LE   E +   + +   +E LH++     + R   
Sbjct: 294 MGEPHFFAAWIESKAKLVYDNVSDWLENSGEWQPETEFIARQIELLHRLCLSRVAWRQTH 353

Query: 432 GAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVEKAKEAALYR 491
             +  +  + +F+   + ++  I    R  A++++EE MI ANI +AS++       +Y 
Sbjct: 354 ALVFKDRPDFRFLLGEKGEVLDIIAEHRRIANRIVEEAMIAANICAASVLRDQLGFGIYN 413

Query: 492 VHEPPGEERLTGFRDFLGELGLDL--SGGLEPSPTDYAN------LMKQIGERPDKELIQ 543
           +H         GF     EL   +  + G++  P   A       L +++  +P  + + 
Sbjct: 414 IH--------PGFDAANAELAAAVLANHGVQADPLAIATLDGFRVLRRELDAQP-TQFLD 464

Query: 544 TMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEG-RNQD 602
           + + R    A    +   HFGL L+ YA +TSPIR+Y D++ HR +K ++  ++  R QD
Sbjct: 465 SRIRRFQSFAEIGTEPGPHFGLGLEAYATWTSPIRKYGDMINHRLLKSIVRGEKAERPQD 524

Query: 603 RWTPTGGYHYSFDDMDFYGEQCSMTERRADD--ATREVSDWLKCEYMQDHVG--EELEGV 658
             T                    M+ERR  +  A R+V DWL   ++Q   G  +     
Sbjct: 525 DIT------------------IRMSERRRLNRMAERDVGDWLYSRFLQSAAGTDQRFSAE 566

Query: 659 VANVTSFGFFVRLTELHIDGLV---HISTLANDYYHYDPIG-QRLVGESFGAIYRLGDAV 714
           + +++  G  VRLT+      V    I  + ++       G  ++ GE     YR+ D +
Sbjct: 567 IIDISRGGMRVRLTDNGAVAFVPAPFIHAVRDELVCSQENGTAQIKGE---VAYRVTDII 623

Query: 715 KVKVLAVNLDDRQI 728
            V V  V ++ R I
Sbjct: 624 DVTVAEVRIETRSI 637