Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 643 a.a., exoribonuclease II from Dickeya dianthicola ME23

 Score =  167 bits (424), Expect = 1e-45
 Identities = 165/674 (24%), Positives = 278/674 (41%), Gaps = 48/674 (7%)

Query: 66  MERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHHQMRTL 125
           M +D  L+   +Q   L  +    +G V     G G++  +     +    +P  QM+ +
Sbjct: 1   MFQDNPLLAQLKQ--QLHSQTPRAEGIVKATDKGFGFLEADA----QKSYFIPPPQMKKV 54

Query: 126 IHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIHHDILI 185
           +HGD ++       +R   E     ++E    + VGR   +     +VPD   +   I  
Sbjct: 55  MHGDRIIAALHTEKEREIAEPET--LVEPFLTRFVGRVQKKDDRLSIVPDHPLLKDAIPC 112

Query: 186 --PNDLRAGARMGNVVVIEITDRGTR-NRGMMGKVVEVLGENMAPGMETQIAIRTHQIPH 242
                +    + G+  V E+     + +RG    +   +     P     + +  H +  
Sbjct: 113 RPARGVEQDFKAGDWAVAEMRRHPLKGDRGFFADLTHYITTGDDPLAPWWVTLSRHNLER 172

Query: 243 EWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGWRL 302
             P   +   A L +   E     R DL  L  VTID     D DDA+Y +    G   +
Sbjct: 173 IAP---DADAAELNDGQLE-----REDLTGLDFVTIDSASTEDMDDALYVQDNGDGTLDM 224

Query: 303 WVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMVC 362
            VAIAD + YVR D+ LD  A  R  + Y P   +PMLP  LS+ +CSL P   R  + C
Sbjct: 225 TVAIADPTAYVRADSELDAIARQRAFTNYLPGFNIPMLPRHLSDDICSLRPNERRPVLAC 284

Query: 363 EMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMYQ 422
            MT++  G LS  + + A + S A+L Y  V   LE   + +     +   +  LH++  
Sbjct: 285 RMTIAADGALSQIRFFAAWIESRAKLVYDDVSNWLEQQGDWQPESDNIADQIRLLHRVCL 344

Query: 423 VLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLVE 482
              + R     +  +  + +F+     ++  I    R  A++++EE MI AN+ +A ++ 
Sbjct: 345 ARNAWRTTHALVFRDRPDYRFLLGENGEVLDIVTEPRRIANRIVEEAMIAANVCAAQVLR 404

Query: 483 KAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKELI 542
            A    +Y VH       +      L   G+        +   +  L +++  +P  + +
Sbjct: 405 DALGFGVYNVHNGFDPVSIDQAVAVLESNGIQADAQQLLTLDGFCVLRRELDAQP-TQFL 463

Query: 543 QTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEG-RNQ 601
            + + R    A  +     HFGL L+ YA +TSPIR+Y D++ HR +K +I      + Q
Sbjct: 464 DSRIRRFQTFAEISTAPGPHFGLGLEAYATWTSPIRKYGDMVNHRLLKAVITHTPAEKPQ 523

Query: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADD--ATREVSDWLKCEYMQDHVGEE--LEG 657
           D  T                    + ERR  +  A R+VSDWL   +++D  G +    G
Sbjct: 524 DEVT------------------LQLAERRRLNRMAERDVSDWLYARFLKDKAGTDARFTG 565

Query: 658 VVANVTSFGFFVRLTELHIDGLV---HISTLANDYYHYDPIGQRLVGESFGAIYRLGDAV 714
            + +V   G  VRL E      +    I  + ++       G  +V      +YR  D +
Sbjct: 566 EIMDVNRGGLRVRLLENGATAFIPASFIHAVRDELVCSQDTG--IVTVKGEPVYRQSDTL 623

Query: 715 KVKVLAVNLDDRQI 728
            V +  V L+ R I
Sbjct: 624 TVMLTEVRLETRNI 637