Pairwise Alignments

Query, 821 a.a., ribonuclease R from Vibrio cholerae E7946 ATCC 55056

Subject, 784 a.a., exoribonuclease from Agrobacterium fabrum C58

 Score =  370 bits (951), Expect = e-106
 Identities = 252/738 (34%), Positives = 378/738 (51%), Gaps = 39/738 (5%)

Query: 22  IPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLRRRLRAMERDGQLVFTRRQCYA 81
           +PSRE +L+F+       ++ ++ +A  L+GE +   L+  L+ +E DG +V   R+   
Sbjct: 36  VPSREVLLKFIADHPQQASKREIAKAFGLKGENRIV-LKALLKELEVDG-MVHKSRKSLT 93

Query: 82  LPEKLEMVKGYVIGHKDGHG--------WVRPEGSLNKEGDILLPHHQMR-----TLIHG 128
            P  L  V    I  +D  G        W  PE        ++    Q R         G
Sbjct: 94  RPGGLPPVTVLDITTRDKDGELIGRPAEW--PEDMGAAPAVLIRQSSQDRGKKAPAAGLG 151

Query: 129 DFVLVQ--PSGTDKRGRKEGRLVRILEERNGQIVGRFF-FEYGYSYVVPDDSRIHHDILI 185
           D +L +  PS          R+V++++ R   ++G F   E G   ++P D R    ++ 
Sbjct: 152 DRILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRRGEEMVID 211

Query: 186 PNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQIPHEWP 245
           P+ +   A+ G+++ +E +    R      KV+ V+G   +    + IAI  H IPH +P
Sbjct: 212 PDGV-GDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPHIFP 270

Query: 246 AEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKG----GGWR 301
             V  +     +         R D R LPL+TID  DA+D DDAVY E         G  
Sbjct: 271 PNVLAEA----DAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVI 326

Query: 302 LWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCMV 361
           + VAIADVS+YVRP   LD+EA+ RGNSVYFP +VVPMLPE +SN LCSL   VDR  + 
Sbjct: 327 VTVAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALA 386

Query: 362 CEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKMY 421
             MT S+ G+ + +  +  +M S A+L+Y +    ++G+ + +     L P L+ L   Y
Sbjct: 387 VRMTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTG-TLLEPILKPLWHAY 445

Query: 422 QVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASLV 481
           +V+K  RD R  +E +  E K        ++ +    R DAHKLIEE MI AN+A+A  +
Sbjct: 446 EVMKRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETL 505

Query: 482 EKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKEL 541
           E  K+  +YRVH+ P   +    R+FLG +G+ ++ G+      +  ++ +  + P + +
Sbjct: 506 ETKKQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIM 565

Query: 542 IQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRNQ 601
           +  M+LRS  QA+Y+ +N GHFGL L +YAHFTSPIRRY DL++HRA+   +   EG   
Sbjct: 566 VNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGLGEGGIT 625

Query: 602 DRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVSDWLKCEYMQDHVGEELEGVVAN 661
            +   T         +D    + S  ERRA  A R+  + L   ++ + VGEE EG V  
Sbjct: 626 PQEEAT---------LDDIAAEISTFERRAMAAERDTVNRLIAHHLSERVGEEFEGRVGG 676

Query: 662 VTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLAV 721
           VT  G FV L +   DG V ISTL  DY+ YD   Q L GE  G  Y+LGD V+V++   
Sbjct: 677 VTKAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGLGYQLGDTVQVRLAEA 736

Query: 722 NLDDRQIDFELVETSRKL 739
                 + FE++   RK+
Sbjct: 737 VPLAGALRFEMLSPGRKM 754