Pairwise Alignments

Query, 247 a.a., 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB from Xanthobacter sp. DMC5

 Score =  136 bits (342), Expect = 5e-37
 Identities = 89/237 (37%), Positives = 129/237 (54%), Gaps = 19/237 (8%)

Query: 5   LIYGIHAVNAVLQRDPARF-----VEAYVLKGRQDDRLLPVLNELMRLGVSIQEMSRKAL 59
           L+YG H V   +     RF      E  + +  ++  + PV  E++R G   + +   A+
Sbjct: 53  LLYGWHTVAEAIGNPKRRFRKLLATENAINRLAEEGLVPPVTPEVVRPGDIDKLLGPDAV 112

Query: 60  DDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLVLDGVTDPHNLGACLRNADA 119
                   HQGL+A V   R     DL      H + L+LVLD +TDPHN+GA +R+A A
Sbjct: 113 --------HQGLLAEVDHLRSPPLKDL-----AHSE-LVLVLDQITDPHNVGAIVRSAAA 158

Query: 120 AGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFVGTAGEA 179
            GV+A++     S   T  ++K A G  E VP   V NLAR +  L++ G+  VG   E 
Sbjct: 159 FGVSAIVTTARHSPAATGVLAKSASGGLEHVPFCLVQNLARALTELKDNGMLVVGLDSEG 218

Query: 180 THDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIPMAGSVSSLNVSVACGVCL 236
             DI  ++L+  LA+V+GAEG G+R+LTRETCD L +I + G++ SLNVS A  + L
Sbjct: 219 PADIEDTRLSAPLALVLGAEGKGLRQLTRETCDVLARIDLPGAIKSLNVSNAAALAL 275