Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., DNA-directed RNA polymerase subunit alpha from Rhodanobacter sp000427505 FW510-R12

 Score =  424 bits (1090), Expect = e-123
 Identities = 213/328 (64%), Positives = 263/328 (80%), Gaps = 2/328 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           M  S T  L+PR + +EQ+    AKV +EPLERGFGHTLGNALRR+LLSS+PG A+ EVE
Sbjct: 1   MAVSSTSVLRPRGLSVEQLGANRAKVVVEPLERGFGHTLGNALRRVLLSSIPGSAIVEVE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHEY+T EG+QED++E+LLNLK +A+R   G DEV +TL+K G G V AGDI  D 
Sbjct: 61  IDGVLHEYTTLEGLQEDVIEVLLNLKDVAIRQHSG-DEVTLTLSKKGKGVVTAGDIVVDH 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
            VEI+NPEHVICHLT D  A+ MR+KV RG GY PAS R H +++ RPIGRL +DA+F+P
Sbjct: 120 SVEIINPEHVICHLTKD-IALNMRLKVRRGVGYQPASTRQHPDDEARPIGRLQLDASFAP 178

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V ++AY V+AARVEQRT+LDKLV+D+ETNGT+  E+A+R+AA I+ +QL  F D      
Sbjct: 179 VLRVAYEVDAARVEQRTNLDKLVLDIETNGTIGAEDAVRKAAEIINDQLSVFGDFSRRES 238

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
             +K EK  FDP+LLRP+DDLELTVRSA+CLKAE+I+YIGDLVQ+TEVELLKTPNLGKKS
Sbjct: 239 ATDKAEKSGFDPLLLRPIDDLELTVRSADCLKAESIYYIGDLVQKTEVELLKTPNLGKKS 298

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIA 328
           LTEIKDVL  RGL+LGM+LENWPP  ++
Sbjct: 299 LTEIKDVLGGRGLALGMKLENWPPPGLS 326