Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 341 a.a., DNA-directed RNA polymerase subunit alpha from Xanthobacter sp. DMC5

 Score =  281 bits (718), Expect = 2e-80
 Identities = 156/336 (46%), Positives = 221/336 (65%), Gaps = 15/336 (4%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTH-----AKVTLEPLERGFGHTLGNALRRILLSSMPGCA 55
           +Q +  E +KP  +   Q++  H     A V  EPLERGFG TLGNALRRILLSS+ G A
Sbjct: 5   IQKNWQELIKPEKL---QVNPGHDPKRLATVIAEPLERGFGMTLGNALRRILLSSLQGAA 61

Query: 56  VTEVEIEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGD 115
           VT + I+GVLHE+S+  GV+ED+ +I+LN+K +A+++ +G     +   K+G G ++AGD
Sbjct: 62  VTSIHIDGVLHEFSSIPGVREDVTDIILNVKDVAIKM-QGDGPKRMVAKKTGPGVLLAGD 120

Query: 116 ITHDGDVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVD 175
           I   GDV+I+NP   IC L  + A + +   V+ G+GYV A        ++ PIG + +D
Sbjct: 121 IQTVGDVQILNPHLPICTL-DEGAELRIEFTVDTGKGYVAAD---RNRPEDAPIGLIPID 176

Query: 176 ATFSPVDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDL 235
           + +SPV K++Y VE  R  Q  D DKL + +ETNG++  E+A+  AA IL +QL+ FV+ 
Sbjct: 177 SLYSPVRKVSYKVENTREGQILDYDKLTLQIETNGSITAEDALAYAARILQDQLEIFVNF 236

Query: 236 RDVRVPEEKE--EKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 293
            + +   E    +   F P LL+ VD+LEL+VRSANCLK + I YIGDL+Q++E E+L+T
Sbjct: 237 EEPKRESEATAIQTLPFSPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKSETEMLRT 296

Query: 294 PNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIAE 329
           PN G+KSL EIK+VLAS GL LGM +  WPP +I E
Sbjct: 297 PNFGRKSLNEIKEVLASLGLHLGMEVPGWPPENIEE 332