Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score =  390 bits (1002), Expect = e-113
 Identities = 197/326 (60%), Positives = 253/326 (77%), Gaps = 6/326 (1%)

Query: 6   TEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGVL 65
           T  LKP+ + +EQ++   AKVTLEP ERG+GHTLGNALRR+LLSSM G + TEV I GVL
Sbjct: 3   TTLLKPKTIQVEQLAANKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAGVL 62

Query: 66  HEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEIV 125
           HEYS+ +GVQED++ ILLNLKG+  ++   +DEV ++L K G GPV+A DI    DVEI+
Sbjct: 63  HEYSSIDGVQEDVVNILLNLKGVVFKL-HNRDEVTLSLRKDGEGPVLASDIQTPHDVEII 121

Query: 126 NPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKIA 185
           NP+HVI HL S    + M+IKVE+GRGYVP + R + +E  + IGR+++DA+FSPV +++
Sbjct: 122 NPDHVIAHL-SQGGKLDMQIKVEKGRGYVPGTMRRYADEPTKSIGRIVLDASFSPVKRVS 180

Query: 186 YSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPEEKE 245
           Y+VE+ARVEQRTDLDKL++++ETNG +  E+A+R +A IL EQL  F  L    +     
Sbjct: 181 YTVESARVEQRTDLDKLLVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDA 240

Query: 246 EKP----EFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSL 301
             P    +FDPILLRPVD+LELTVRSANCLKAE I+YIGDL+QRTE ELLKTPNLG+KSL
Sbjct: 241 PTPRSAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL 300

Query: 302 TEIKDVLASRGLSLGMRLENWPPASI 327
            EIK+VLASRGL+LGM+LE+WPPA +
Sbjct: 301 NEIKEVLASRGLTLGMKLESWPPAGL 326