Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 333 a.a., DNA-directed RNA polymerase subunit alpha from Pseudomonas putida KT2440

 Score =  463 bits (1191), Expect = e-135
 Identities = 241/330 (73%), Positives = 278/330 (84%), Gaps = 2/330 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           MQ SV EFL PR +D++ +S T AK+TLEPLERGFGHTLGNALRRILLSSMPGCAV E E
Sbjct: 1   MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHEYS  EGVQED++EILLNLKGLA+++  G+DEV +TL+K GSG V A DI  D 
Sbjct: 61  IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKL-HGRDEVTLTLSKKGSGVVTAADIQLDH 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           DVEIVNP+HVI +L S N A+ M++ V RGRGY PA +R   E++ R IGRL +DA+FSP
Sbjct: 120 DVEIVNPDHVIANLAS-NGALNMKLTVARGRGYEPADSRQTDEDESRSIGRLQLDASFSP 178

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V +IAY VE ARVEQRT+LDKLVID+ETNGTL+PEEAIRRAATIL +QL AFVDL+    
Sbjct: 179 VRRIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSE 238

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
           P   E++ E DPILLRPVDDLELTVRSANCLKAE I+YIGDL+QRTEVELLKTPNLGKKS
Sbjct: 239 PVVVEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKS 298

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIAED 330
           LTEIKDVLASRGLSLGMRL+NWPPAS+ +D
Sbjct: 299 LTEIKDVLASRGLSLGMRLDNWPPASLKKD 328