Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., DNA-directed RNA polymerase alpha subunit (EC 2.7.7.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  389 bits (998), Expect = e-113
 Identities = 201/328 (61%), Positives = 257/328 (78%), Gaps = 9/328 (2%)

Query: 5   VTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEGV 64
           +   LKP+ +++EQ+ST  AKVTLEP ERG+GHTLGNALRR+LLSSM G A TEV I GV
Sbjct: 2   LNNLLKPKTINVEQVSTNRAKVTLEPFERGYGHTLGNALRRVLLSSMTGHAPTEVTIAGV 61

Query: 65  LHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDVEI 124
           +HEYS+ +GVQED++ +LLNLKG+  ++   +DEV ++L K G G V A DI    DVEI
Sbjct: 62  VHEYSSIDGVQEDVVNMLLNLKGVVFKL-HNRDEVTLSLRKDGEGVVTAADIQTPHDVEI 120

Query: 125 VNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVDKI 184
           VNP H I  L++  A + M+IKVE+GRGYVP S R   ++  R IGR+++DA+FSPV ++
Sbjct: 121 VNPGHAIATLSA-GAKLDMQIKVEKGRGYVPGSLR-RNDDQTRSIGRIVLDASFSPVKRV 178

Query: 185 AYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV---- 240
           +Y+VE+ARVEQRTDLDKLV+++ETNG++ PEEA+R +A IL EQL  F  L  V +    
Sbjct: 179 SYTVESARVEQRTDLDKLVLEIETNGSIGPEEAVRASAKILVEQLAVFAQLEGVELSAFD 238

Query: 241 -PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKK 299
            P ++  + +FDPILLRPVD+LELTVRSANCLKAE I+YIGDL+QRTE ELLKTPNLG+K
Sbjct: 239 APAQRSSQ-QFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRK 297

Query: 300 SLTEIKDVLASRGLSLGMRLENWPPASI 327
           SL EIK+VLASRGL+LGM+LENWPPA +
Sbjct: 298 SLNEIKEVLASRGLTLGMKLENWPPAGL 325