Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., DNA-directed RNA polymerase subunit alpha from Magnetospirillum magneticum AMB-1

 Score =  296 bits (758), Expect = 5e-85
 Identities = 165/333 (49%), Positives = 225/333 (67%), Gaps = 9/333 (2%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTH--AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTE 58
           +Q +  E +KP  + +E  +     A V  EPLERGFG TLGN+LRR+LLSS+ G AVT 
Sbjct: 2   IQKNWQELIKPNKLHVEPGADPQRTAIVVAEPLERGFGMTLGNSLRRVLLSSLQGAAVTA 61

Query: 59  VEIEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITH 118
           ++I+GVLHE+S+  GV+ED+ +I+LN+K L +R+  G+    + L   G G V AG I  
Sbjct: 62  IQIDGVLHEFSSIPGVREDVTDIILNIKTLGLRM-HGEGPKRMHLRAVGPGEVTAGLIEV 120

Query: 119 DGDVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATF 178
             D+EI++PE V+C L  + A + +   VE G+GYVPAS       ++ PIG + +DA F
Sbjct: 121 GHDIEIMDPELVLCTL-DEGAKLNIEFTVETGKGYVPAS---QNRPEDSPIGLIPIDAIF 176

Query: 179 SPVDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDV 238
           SPV K+AY VE  RV Q TD DKL + +ETNG + P++A+  AA IL +QL  F++  + 
Sbjct: 177 SPVRKVAYKVENTRVGQVTDYDKLSMTVETNGAVTPDDAVALAARILQDQLQLFINFEEP 236

Query: 239 R--VPEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNL 296
              V EEK+++  F+  LLR VD+LEL+VRSANCLK + I YIGDLVQ+TE E+L+TPN 
Sbjct: 237 TAVVEEEKKDELPFNKNLLRKVDELELSVRSANCLKNDNIIYIGDLVQKTEAEMLRTPNF 296

Query: 297 GKKSLTEIKDVLASRGLSLGMRLENWPPASIAE 329
           G+KSL EIK+VLA  GL LGM + NWPP +I E
Sbjct: 297 GRKSLNEIKEVLAQMGLHLGMEIANWPPENIEE 329