Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., DNA-directed RNA polymerase subunit alpha from Dickeya dianthicola ME23

 Score =  592 bits (1525), Expect = e-174
 Identities = 300/330 (90%), Positives = 319/330 (96%), Gaps = 1/330 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           MQGSVTEFLKPRLVDIEQ+S+THAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
Sbjct: 1   MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHEYSTKEGVQEDILEILLNLKGLAVRV +GKDEV +TLNKSG GPV A DITHDG
Sbjct: 61  IDGVLHEYSTKEGVQEDILEILLNLKGLAVRV-QGKDEVILTLNKSGIGPVTAADITHDG 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           DVEIV P+HVICHLT +NA+I MRIKV+RGRGYVPASARIHTEEDERPIGRLLVDA +SP
Sbjct: 120 DVEIVKPQHVICHLTDENASINMRIKVQRGRGYVPASARIHTEEDERPIGRLLVDACYSP 179

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V++IAY+VEAARVEQRTDLDKLVI+METNGT++PEEAIRRAATILAEQL+AFVDLRDVR 
Sbjct: 180 VERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILAEQLEAFVDLRDVRQ 239

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
           PE KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS
Sbjct: 240 PEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 299

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIAED 330
           LTEIKDVLASRGLSLGMRLENWPPASIA++
Sbjct: 300 LTEIKDVLASRGLSLGMRLENWPPASIADE 329