Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  228 bits (580), Expect = 2e-64
 Identities = 127/327 (38%), Positives = 196/327 (59%), Gaps = 12/327 (3%)

Query: 4   SVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIEG 63
           S+  F  P  V +E+    H   T +PLE+G+G T+GNALRRILLSS+ G A+T V++ G
Sbjct: 2   SILAFQMPEKVVMEKADDFHGLFTFKPLEKGYGVTIGNALRRILLSSLEGYAITSVKLPG 61

Query: 64  VLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDIT-HDGDV 122
           V+HE+ST EGV ED+ +I+LNLK +  +      +  IT+         AGDI       
Sbjct: 62  VVHEFSTIEGVVEDVTDIILNLKQVRFKKIHDSIDGKITVEVKNQDVFTAGDIAKFTSSF 121

Query: 123 EIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVD 182
           E++NP+ VICHL  D+ +  + + VE+GRGY+PA     ++  E+  G + +DA F+P+ 
Sbjct: 122 EVLNPDLVICHL-DDSKSFEIELTVEKGRGYLPAE---ESKPKEQVFGVIPIDAIFTPIK 177

Query: 183 KIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAF------VDLR 236
            + YSVE  RVEQ+TD +KLV+++ T+G++ PE+A++ +A IL +    F      +D  
Sbjct: 178 NVKYSVENTRVEQKTDFEKLVLEVSTDGSIHPEKALQESAKILIQHFMLFSDQTMVIDTP 237

Query: 237 DVRVPEE-KEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPN 295
               PE   EE      +L  P+ DL+L+VR+ NCLKA  +  +GDL +    +++K  N
Sbjct: 238 GGDSPEPIDEEFLHMRKLLKTPLSDLDLSVRAFNCLKAADVKTLGDLAKLEISDMMKFRN 297

Query: 296 LGKKSLTEIKDVLASRGLSLGMRLENW 322
            GKKSL E++ ++  +GL  GM +  +
Sbjct: 298 FGKKSLAELEQLIQEKGLQFGMDISKY 324