Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., DNA-directed RNA polymerase subunit alpha from Alteromonas macleodii MIT1002

 Score =  549 bits (1414), Expect = e-161
 Identities = 283/327 (86%), Positives = 304/327 (92%), Gaps = 2/327 (0%)

Query: 3   GSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIE 62
           GSVTEFLKPRLV+IE +S T AKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEI+
Sbjct: 2   GSVTEFLKPRLVEIENVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEID 61

Query: 63  GVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDGDV 122
           GVLHEYSTKEGVQED++EILLNLKGLAVR+ EGK E  +TL KSG+GPVVAGDI HDGDV
Sbjct: 62  GVLHEYSTKEGVQEDVIEILLNLKGLAVRL-EGKTEATLTLVKSGAGPVVAGDIQHDGDV 120

Query: 123 EIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSPVD 182
           EI NP+HVIC LT + A I+MRIKVE GRGYVPAS R  +EED+RPIGRLLVDA++SPV+
Sbjct: 121 EITNPDHVICTLTGE-AEISMRIKVEMGRGYVPASTRRSSEEDDRPIGRLLVDASYSPVE 179

Query: 183 KIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRVPE 242
           +IAYSVE+ARVEQRTDLDKL+IDMETNGTL+PEEAIRR+ATILAEQLDAFVDLRDV  PE
Sbjct: 180 RIAYSVESARVEQRTDLDKLIIDMETNGTLDPEEAIRRSATILAEQLDAFVDLRDVSEPE 239

Query: 243 EKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT 302
            KEEKPEFDPILLRPVDDLELTVRSANCLKAEAI YIGDLVQRTEVELLKTPNLGKKSLT
Sbjct: 240 AKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIQYIGDLVQRTEVELLKTPNLGKKSLT 299

Query: 303 EIKDVLASRGLSLGMRLENWPPASIAE 329
           EIKDVLASRGLSLGMRLENWPP SIAE
Sbjct: 300 EIKDVLASRGLSLGMRLENWPPESIAE 326