Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., DNA-directed RNA polymerase alpha subunit from Agrobacterium fabrum C58

 Score =  311 bits (797), Expect = 1e-89
 Identities = 166/331 (50%), Positives = 227/331 (68%), Gaps = 7/331 (2%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           +Q +  E +KP  V+    S T A +  EPLERGFG TLGNALRR+LLSS+ G AVT V+
Sbjct: 2   IQKNWQELIKPNKVEFTSSSRTKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTAVQ 61

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           I+GVLHE+S+  GV+ED+ +I+LN+K +A+++ +G D   + + K G G V AGDI   G
Sbjct: 62  IDGVLHEFSSIPGVREDVTDIVLNIKEIAIKM-DGDDSKRMVVRKQGPGSVTAGDIQTVG 120

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           D+EI+NP+HVIC L  + A I M   V  G+GYVPA        ++ PIG + VD+ +SP
Sbjct: 121 DIEILNPDHVICTL-DEGAEIRMEFTVNNGKGYVPAE---RNRAEDAPIGLIPVDSLYSP 176

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           V K++Y VE  R  Q  D DKL++ +ETNG++  E+A+  AA IL +QL  FV+  + + 
Sbjct: 177 VKKVSYKVENTREGQVLDYDKLIMTIETNGSVSGEDAVAFAARILQDQLGVFVNFDEPQK 236

Query: 241 PEEKEEKPE--FDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGK 298
             E+E   E  F+P LL+ VD+LEL+VRSANCLK + I YIGDL+Q+TE E+L+TPN G+
Sbjct: 237 EAEEESVTELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGR 296

Query: 299 KSLTEIKDVLASRGLSLGMRLENWPPASIAE 329
           KSL EIK+VLAS GL LGM +  WPP +I +
Sbjct: 297 KSLNEIKEVLASMGLHLGMEVPAWPPENIED 327