Pairwise Alignments

Query, 330 a.a., DNA-directed RNA polymerase subunit alpha from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., DNA-directed RNA polymerase subunit alpha from Acinetobacter radioresistens SK82

 Score =  421 bits (1081), Expect = e-122
 Identities = 214/330 (64%), Positives = 270/330 (81%), Gaps = 3/330 (0%)

Query: 1   MQGSVTEFLKPRLVDIEQISTTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE 60
           M  +  EFL P+ + +E +S T AKV LEPLERGFGHTLGNALRRILLSS+PG AV EVE
Sbjct: 1   MTRTANEFLTPQAIKVEAVSGTSAKVILEPLERGFGHTLGNALRRILLSSLPGAAVVEVE 60

Query: 61  IEGVLHEYSTKEGVQEDILEILLNLKGLAVRVAEGKDEVFITLNKSGSGPVVAGDITHDG 120
           IEGV HEYST EG+Q+DI+E+LLNLKGL++++ + ++E ++TL K G G + A D+    
Sbjct: 61  IEGVEHEYSTLEGLQQDIVELLLNLKGLSIKLFD-QNEAYLTLEKQGPGDITAADLRLPH 119

Query: 121 DVEIVNPEHVICHLTSDNAAIAMRIKVERGRGYVPASARIHTEEDERPIGRLLVDATFSP 180
           +VE+VNPEH+I  L++ + +I MR+KV +GRGY  + +R   E + RP+GRL +DA++SP
Sbjct: 120 NVEVVNPEHLIGTLSA-SGSIKMRLKVAQGRGYETSDSRF-PEGETRPVGRLQLDASYSP 177

Query: 181 VDKIAYSVEAARVEQRTDLDKLVIDMETNGTLEPEEAIRRAATILAEQLDAFVDLRDVRV 240
           + +++Y+VE ARVEQRTDLDKL+ID+ETNGT++PEEAIR+AATIL +Q+  FVDL+  + 
Sbjct: 178 IQRVSYTVENARVEQRTDLDKLIIDLETNGTVDPEEAIRKAATILQQQIAIFVDLQKDQA 237

Query: 241 PEEKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKS 300
           P  +E + E DPILLRPVDDLELTVRSANCLKAE I+YIGDLVQRTEVELLKTPNLGKKS
Sbjct: 238 PVAQEPREEVDPILLRPVDDLELTVRSANCLKAENIYYIGDLVQRTEVELLKTPNLGKKS 297

Query: 301 LTEIKDVLASRGLSLGMRLENWPPASIAED 330
           LTEIKDVLAS+GL LGMRLENWPPAS+  D
Sbjct: 298 LTEIKDVLASKGLQLGMRLENWPPASLRMD 327