Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., DEAD/DEAH box helicase from Rhodanobacter sp000427505 FW510-R12

 Score =  293 bits (751), Expect = 8e-84
 Identities = 162/371 (43%), Positives = 230/371 (61%), Gaps = 2/371 (0%)

Query: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62
           ++ F AL L P++L  L  +G+ + +PIQA ++P +L+G+DV+GQ +TG+GKTAAF L +
Sbjct: 12  SSGFGALALHPDVLRVLADVGYESPSPIQAATIPPLLEGRDVLGQAQTGTGKTAAFALPI 71

Query: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
           LS +  K  + QALVL PTRELA QVA   +T    +   +VL + GG   GPQ+ SL+ 
Sbjct: 72  LSRIERKPGKPQALVLAPTRELAIQVAEAFQTYAAHLPGFQVLPIYGGQSYGPQLHSLKR 131

Query: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
           G H++VGTPGR++DHL K  +DLSEL  LVLDEAD ML MGF + +E ++ A P  RQ  
Sbjct: 132 GVHVVVGTPGRVIDHLDKGTLDLSELKFLVLDEADEMLRMGFIDDVEKVLQATPPGRQVA 191

Query: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALETLLLHH 241
           LFSAT PA I +IAQ   +  + + ++A   T++ I Q ++ V G    D AL  +L   
Sbjct: 192 LFSATMPAPIRKIAQRHLKEPVEVTIKAATTTAANIHQRYWFVSGMHKLD-ALTRILEAE 250

Query: 242 QPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATD 301
              + ++F  TK+  + +A+ L   G +   ++GD+ Q +R++ + Q  +  + ILVATD
Sbjct: 251 PFDAMIIFARTKQATEELAEKLQARGLAAAAINGDIAQAQRERVIQQLKDGKLDILVATD 310

Query: 302 VAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEY 361
           VAARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G A  F S  E   +  I+  
Sbjct: 311 VAARGLDVERISHVLNYDIPYDTESYVHRIGRTGRAGRSGEAILFVSPRERGMLHAIERA 370

Query: 362 MDIAIEPSTLP 372
               IE   LP
Sbjct: 371 TRQPIEQMQLP 381



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 16/58 (27%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 371 LPQPAAGARPYAANMV-----TIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
           LP+ +    P  A+       T +I+ G +  V+PG+I+GA+ ++  L +++IG++++
Sbjct: 484 LPRESGHPHPLRAHATEQGKRTYRIEVGHEHGVKPGNIIGAIANEAGLDSQYIGRLSI 541