Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 489 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Variovorax sp. SCN45

 Score =  277 bits (709), Expect = 5e-79
 Identities = 161/374 (43%), Positives = 232/374 (62%), Gaps = 12/374 (3%)

Query: 4   NSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           +SF+ L+L   L   +  MG+ TMTPIQ Q++P +L GQDV+G  +TG+GKTAAF L +L
Sbjct: 3   SSFSNLSLAEPLARAVAEMGYETMTPIQEQAIPVVLSGQDVMGAAQTGTGKTAAFSLPLL 62

Query: 64  SNL--------NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGP 115
             +        +  R  V+ALVL PTRELADQVA  I+   +   N++   + GG+ M P
Sbjct: 63  QRMLKHENASTSPARHPVRALVLLPTRELADQVAQQIKLYAKYT-NLRSTVVFGGIDMKP 121

Query: 116 QIGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAA 175
           Q   L+ G  +LV TPGR+LDH+      L+++  +VLDEADRML++GF   L+ I++  
Sbjct: 122 QTLELKKGVEVLVATPGRLLDHIEAKNAVLNQVEYVVLDEADRMLDIGFLPDLQRILSYL 181

Query: 176 PAERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEAL 234
           P +R TLLFSAT+   I+++A S  +N + I+V   ++T+S + Q+FY V     R  AL
Sbjct: 182 PKQRTTLLFSATFSPEIKRLASSYLQNPITIEVARPNETASTVEQHFYSVSDDDKR-RAL 240

Query: 235 ETLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSI 294
           + ++     T + VF N+K     +A +L + G     LHGD  Q ER +AL  F    +
Sbjct: 241 KQIVRQRGITQAFVFVNSKLGCARLARSLERDGLRTTALHGDKSQDERLKALASFKAGEV 300

Query: 295 SILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFS-DNESY 353
            +LV TDVAARGLD+ ++ AVFN+D+  + E +VHRIGRTGRAG+ GLA SF S  N++ 
Sbjct: 301 DLLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFASGGNDAR 360

Query: 354 RVAQIDEYMDIAIE 367
            VA I++ +   IE
Sbjct: 361 LVADIEKLIKKKIE 374