Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 604 a.a., DEAD/DEAH box helicase from Variovorax sp. OAS795

 Score =  259 bits (663), Expect = 1e-73
 Identities = 160/403 (39%), Positives = 229/403 (56%), Gaps = 15/403 (3%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F  L L P +L  +   G+ T TPIQAQ++PA+L G D++G  +TG+GKTAAF L +L 
Sbjct: 2   NFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLDGHDLLGGAQTGTGKTAAFTLPMLH 61

Query: 65  NLNVKR--------FRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
            L+             ++ALVL PTRELA QV   +RT G+ +  +    + GG+ M PQ
Sbjct: 62  KLSTGASATNKFGGIGIRALVLTPTRELAAQVEESVRTYGKYLE-LDSTVIFGGVGMNPQ 120

Query: 117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176
           I  L+ G  ILV TPGR+LD   +  +DLS++  LVLDEADRML+MGF   ++ I+A  P
Sbjct: 121 ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQILVLDEADRMLDMGFIHDVKKILALVP 180

Query: 177 AERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALE 235
            E+Q+LLFSAT+   I  +A ++ +N   I+V   + T   I Q  + V G   +   L 
Sbjct: 181 REKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPV-GRGKKKALLA 239

Query: 236 TLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSIS 295
            ++  ++ +  +VF  TK    +VA+ L ++G   + LHG+  Q  R QAL  F +  I 
Sbjct: 240 HIINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIR 299

Query: 296 ILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRV 355
            LVATD+AARG+D+D L  V NY++    E +VHRIGRTGRAGS G A SF   +E   +
Sbjct: 300 ALVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCMDEEGFM 359

Query: 356 AQIDEYMDIAIEPSTL----PQPAAGARPYAANMVTIQIDGGK 394
            +I+ +    I    +    P+    A P A    TI    G+
Sbjct: 360 QEIERFTKQTIPVQFVEGFGPEEGERAEPIAMGRQTIWGGAGR 402