Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., ATP-dependent RNA helicase Atu1833 from Sphingobium sp. HT1-2

 Score =  273 bits (697), Expect = 1e-77
 Identities = 161/378 (42%), Positives = 231/378 (61%), Gaps = 6/378 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +FA L L  ELL  +   G+ T TPIQAQ++P +L  +D+IG  +TG+GKTA+F L ++ 
Sbjct: 2   TFADLGLSDELLKAVTEAGYDTPTPIQAQAIPPVLMMKDIIGIAQTGTGKTASFVLPMID 61

Query: 65  NLNVKRFRV---QALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
            L   R R    ++L+L PTRELA QVA +    G+  H + +  L GG+ MG QI +LE
Sbjct: 62  ILAHGRARALMPRSLILEPTRELAAQVAENFEKYGK-YHKLSMALLIGGVQMGDQIKALE 120

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            G  +L+ TPGR++D   + +I L+  N LV+DEADRML+MGF   +E I    PA+RQT
Sbjct: 121 KGVDVLIATPGRLMDLFQRGKILLNGCNMLVIDEADRMLDMGFIPDIEEICTKLPAQRQT 180

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALETLLLH 240
           LLFSAT P  I+++A     N   I+V      S+ I Q   KV+    R EAL  +L  
Sbjct: 181 LLFSATMPPVIKKLADRFLDNPKSIEVARPATASTNITQRLVKVDSRKKR-EALRAMLEA 239

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
               S+V+FCN K  V+ +  +L + GF   E+HGD++Q  R   L +F + S++ILVA+
Sbjct: 240 EDVQSAVIFCNRKTTVRELNKSLQRHGFKSGEIHGDIDQASRIAELERFRDGSVNILVAS 299

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARGLD+  +  VFN+D    P+ +VHRIGRTGRAG+KG+A++F +  ++  +  I +
Sbjct: 300 DVAARGLDIKGVSHVFNFDAPWHPDDYVHRIGRTGRAGAKGVAYTFVAAEDAEAIDNIQK 359

Query: 361 YMDIAIEPSTLPQPAAGA 378
            +   I+    P  AA A
Sbjct: 360 LIGTKIDYVETPVAAAPA 377