Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., ATP-dependent RNA helicase, specific for 23S rRNA from Pseudomonas putida KT2440

 Score =  479 bits (1234), Expect = e-140
 Identities = 247/458 (53%), Positives = 322/458 (70%), Gaps = 2/458 (0%)

Query: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62
           + +FA L L   +LANLE +G+A+MTPIQAQSLP ILKGQD+I Q KTGSGKTAAFG+G+
Sbjct: 5   STAFATLPLSTAMLANLEALGYASMTPIQAQSLPVILKGQDLIAQAKTGSGKTAAFGIGL 64

Query: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
           L+ +N + F  QALVLCPTRELADQVA ++R L RA  NIK+LTLCGG+ +GPQI SLEH
Sbjct: 65  LNPINPRYFGCQALVLCPTRELADQVAKELRRLARAEDNIKILTLCGGVSLGPQIASLEH 124

Query: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
           GAHI+VGTPGRI  HL K  + L  LNTLVLDEADRML+MGF +A+ +II   P+ RQTL
Sbjct: 125 GAHIIVGTPGRIQQHLDKGTLVLDGLNTLVLDEADRMLDMGFFDAIASIIGKTPSRRQTL 184

Query: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQ 242
           LFSATYPA I+Q+A    RN   +KVE+ H  + I Q F +++    R EA+  +L H++
Sbjct: 185 LFSATYPAGIKQLAADFMRNPQQVKVESLHTDNQIEQRFIEID-PQQRLEAVTRVLGHYR 243

Query: 243 PTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302
           P S V FC TK++ ++V   L   G     LHGD+EQR+RDQ L  FAN+S S+LVATDV
Sbjct: 244 PQSCVAFCFTKQQCEDVVAHLTAKGIVAQALHGDLEQRDRDQVLTMFANRSSSVLVATDV 303

Query: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM 362
           AARGLD+D LD V N +L+RD E+HVHR+GRTGRAG KG+A S  +  E +R   I+   
Sbjct: 304 AARGLDIDGLDMVINVELARDAEIHVHRVGRTGRAGEKGVAVSLVAPAEGHRAQAIEALQ 363

Query: 363 DIAIEPSTLPQ-PAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKI 421
           +  +    L      G  P    M T+ I  G+KDK+RPGDILGALT D  +  + +GKI
Sbjct: 364 NSPLRWDQLDSLKNKGGEPLLPVMTTLCIAAGRKDKLRPGDILGALTGDAGIPGKQVGKI 423

Query: 422 NLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLL 459
            +F  +A+VAV + +A +A+ ++ +GK+KGR  + R++
Sbjct: 424 AIFDFQAFVAVERALAKQAMQRLNSGKIKGRALKVRII 461