Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., ATP-dependent DEAD-box RNA helicase DeaD from Pseudomonas putida KT2440

 Score =  280 bits (716), Expect = 9e-80
 Identities = 154/371 (41%), Positives = 223/371 (60%)

Query: 6   FAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLSN 65
           FAAL+L P ++A +   G+   + IQ QS+P IL G D+IGQ +TG+GKTAAF L +L+ 
Sbjct: 8   FAALDLNPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAFALPILNK 67

Query: 66  LNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGAH 125
           ++V +   QAL+L PTRELA QVAT   T  + +  + V+ + GG PMGPQ+ ++ +GA 
Sbjct: 68  IDVSKREPQALILAPTRELALQVATAFETYAKQMPGVNVVAVYGGAPMGPQLRAIRNGAQ 127

Query: 126 ILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLFS 185
           I+V TPGR+ DHL +D   LS +  LVLDEAD ML++GF + LE I  A PA RQT+LFS
Sbjct: 128 IVVATPGRLCDHLRRDEKVLSTVQYLVLDEADEMLKLGFMDDLEVIFDAIPATRQTVLFS 187

Query: 186 ATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQPTS 245
           AT P+SI  IA+   R    +K++    T +  +  + +  +  +  A+  LL   +  +
Sbjct: 188 ATLPSSIRSIAERHLREPKHVKIQTKTQTVTAIEQAHLMVHADQKIPAVLRLLEVEEFDA 247

Query: 246 SVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAAR 305
            + F  TK+   ++A AL   G+    L+GD+ Q +R++ +    +  + I+VATDVAAR
Sbjct: 248 LIAFVRTKQATLDLAAALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVVATDVAAR 307

Query: 306 GLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMDIA 365
           GLDV  +  VFN D+  DPE +VHRIGRTGRAG  G A    +  E   +  I+      
Sbjct: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGRDGRALLLVTPRERRMLQVIERVTGQK 367

Query: 366 IEPSTLPQPAA 376
           +  + LP   A
Sbjct: 368 VAEARLPNAQA 378



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 20/78 (25%), Positives = 41/78 (52%)

Query: 380 PYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATK 439
           P A   V  +   G +D +   ++LGA+ ++G L  + IG+I +    + V + +    K
Sbjct: 477 PLAEGRVRCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQVRDSFSLVELPEDGLEK 536

Query: 440 ALNKIANGKMKGRQFRAR 457
            L+K+ + ++ G+Q + R
Sbjct: 537 LLSKLKDTRVAGKQLKLR 554