Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., RNA helicase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  301 bits (772), Expect = 3e-86
 Identities = 158/374 (42%), Positives = 236/374 (63%), Gaps = 3/374 (0%)

Query: 1   MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
           MN   F  L L PE+   +  MGF   +PIQ +++P +L G+D+IGQ +TG+GKTAAFG+
Sbjct: 1   MNKIRFEELPLSPEVQRAIADMGFEEASPIQTEAIPVVLSGKDIIGQAQTGTGKTAAFGI 60

Query: 61  GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
             +  ++     VQAL+LCPTRELA QV+ +I+ L +    I V+ + GG     Q+ +L
Sbjct: 61  PTIETVDPSDRSVQALILCPTRELAIQVSGEIQKLAKYKQGISVVPIYGGQSYDRQLRAL 120

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
           + G  I++GTPGR++DH+ +  + L  +N ++LDEAD ML+MGF+E +E ++   P +RQ
Sbjct: 121 KQGVQIVIGTPGRVMDHIQRGTLVLDNVNKIILDEADEMLDMGFREDIEFVLERIPEDRQ 180

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLL 239
           T+ FSAT    I ++ +    + +++KV     T ++I Q +++V  S A+ E L  LL 
Sbjct: 181 TIFFSATMSKPIMEMTKRYQTDPVLVKVVHQELTVTNIDQAYFEVRNS-AKQEVLSRLLD 239

Query: 240 HHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVA 299
            +   S+++FCNTKR V ++   L   G+    LHGD+ Q +R   + +F N ++ ILVA
Sbjct: 240 MYNLKSAIIFCNTKRMVDDLVTGLQARGYFSDALHGDLNQNQRSAVMNKFRNGTLEILVA 299

Query: 300 TDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSD-NESYRVAQI 358
           TDVAARGLDV+N++AVFNYDL +D E +VHRIGRTGRAG  G AFSF    ++ Y++  I
Sbjct: 300 TDVAARGLDVENVEAVFNYDLPQDEESYVHRIGRTGRAGKSGKAFSFVGGRSDGYKLKDI 359

Query: 359 DEYMDIAIEPSTLP 372
             Y    I    +P
Sbjct: 360 MRYTKAKIVLQQVP 373



 Score = 35.0 bits (79), Expect = 7e-06
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 393 GKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNKIANGKMKGR 452
           GKKD+V P D++  L  +  +    +G I+L+   ++V V  +   + +  I   +  GR
Sbjct: 461 GKKDRVHPRDLIDLLAQNSSIPEGRVGDIDLYDKFSFVEVPTEYTAEIVENIGRVEYDGR 520