Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 464 a.a., ATP-dependent 23S rRNA helicase DbpA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  463 bits (1192), Expect = e-135
 Identities = 243/460 (52%), Positives = 323/460 (70%), Gaps = 4/460 (0%)

Query: 3   ANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGV 62
           + +F+AL L P  LANLE +G+  MTPIQA +LP  L G+D+I Q KTGSGKTAAF L +
Sbjct: 6   STAFSALPLSPATLANLEQLGYTAMTPIQAAALPPALLGKDLIAQAKTGSGKTAAFALTL 65

Query: 63  LSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEH 122
           L+NLN +RF VQ LVLCPTRELADQV T+IR L RA  NIKV+TLCGG+P+  Q+ +LEH
Sbjct: 66  LANLNPRRFAVQTLVLCPTRELADQVTTEIRRLARAEDNIKVVTLCGGVPLRGQLATLEH 125

Query: 123 GAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTL 182
           GAHI+VGTPGRI+DHL +  + L  LNTLVLDEADRML+MGF + +  +    P  RQTL
Sbjct: 126 GAHIVVGTPGRIMDHLERGSLQLDALNTLVLDEADRMLDMGFFDDIVTVAKQCPKARQTL 185

Query: 183 LFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQ 242
           LFSATYP  I +++    R  L +KVEA H  + I Q +Y+V  +  R +A+  LL H +
Sbjct: 186 LFSATYPEGIAKLSAQFMREPLTVKVEAQHAGAQIEQRWYEVTEN-ERLDAVGKLLFHFR 244

Query: 243 PTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDV 302
           P S++ FCNTK + +++   L   G S + L G++EQRERDQ LV+FAN+S S+LVATDV
Sbjct: 245 PASTLAFCNTKAQCRDLVAVLQAQGISALALFGELEQRERDQVLVRFANRSCSVLVATDV 304

Query: 303 AARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM 362
           AARGLD+ +L AV N D++ DPEVH+HRIGRTGRAG  GLA +  S +E   V +I+   
Sbjct: 305 AARGLDIASLAAVINVDVTPDPEVHIHRIGRTGRAGESGLALNLASLDEMGSVGKIEHLQ 364

Query: 363 --DIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGK 420
             + +  P +  QPA+   P  A MVT+ I GG+K+K+RPGD+LGALT+D   T E +GK
Sbjct: 365 GRESSWHPLSELQPAS-KDPLVAPMVTLHIQGGRKEKIRPGDVLGALTADLGYTREQVGK 423

Query: 421 INLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
           IN+     YVAV + IA +A +++  G++KG+  + R+L+
Sbjct: 424 INVNEWSTYVAVDRDIAQQAASRLNAGRIKGKSVKVRVLE 463