Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., ATP-dependent RNA helicase RhlE from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  266 bits (680), Expect = 1e-75
 Identities = 161/403 (39%), Positives = 237/403 (58%), Gaps = 15/403 (3%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F  LNL P ++  +   G+ T TPIQ +++PA+L G+D++G  +TG+GKTAAF L +L 
Sbjct: 16  TFDDLNLAPAIVQAVREHGYETPTPIQVEAIPAVLAGRDLLGGAQTGTGKTAAFTLPMLH 75

Query: 65  NL-NVKRFR-------VQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
            L N +R +       ++ALVL PTRELA QV   +R  G+ + ++    + GG+ M PQ
Sbjct: 76  RLANSERAKSRFGGVGIRALVLTPTRELAAQVEESVRVYGKHL-SLTSTVVFGGVGMNPQ 134

Query: 117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176
           I +++ G  ILV TPGR+LD   +  +DLS +  LVLDEADRML+MGF   ++ I+A  P
Sbjct: 135 INAMKRGVDILVATPGRLLDLQQQGFLDLSTVQMLVLDEADRMLDMGFIHDVKKILALVP 194

Query: 177 AERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALE 235
            E+Q+LLFSAT+   I  +A ++ ++ L I+V   + T   I Q  + V G   +   L 
Sbjct: 195 KEKQSLLFSATFSDEIRDLASALLKDPLHIQVTPRNTTVQRITQVIHPV-GRGKKKALLV 253

Query: 236 TLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSIS 295
            ++  H  +  +VF  TK    NVA+ L ++G   + LHG+  Q  R QAL  F +  I 
Sbjct: 254 HIINQHNWSQVLVFTRTKFGANNVAEYLTKNGIHAMALHGNKSQGARTQALAGFKSGEIR 313

Query: 296 ILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRV 355
            LVATD+AARG+D+D L  V NY++    E +VHRIGRTGRAG+ G A +  S +E   +
Sbjct: 314 ALVATDIAARGIDIDELPHVVNYEIPNISEDYVHRIGRTGRAGNSGEAVNLVSLDEEGFM 373

Query: 356 AQIDEY----MDIAIEPSTLPQPAAGARPYAANMVTIQIDGGK 394
            +I+ +    + + I P  +P+P   A P A    TI    GK
Sbjct: 374 MEIERFTKQQIPVQIFPEFMPEPGEKAEPIAMGRQTIWGGAGK 416