Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 496 a.a., ATP-dependent RNA helicase Bcep18194_A5658 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  280 bits (716), Expect = 8e-80
 Identities = 157/376 (41%), Positives = 236/376 (62%), Gaps = 11/376 (2%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SF+ L+L P +   +  MG+ATMTPIQAQ++P +L+G+DV+G  +TG+GKTAAF L +L 
Sbjct: 4   SFSELSLSPAIERAVAEMGYATMTPIQAQAIPVVLQGRDVMGAAQTGTGKTAAFTLPLLQ 63

Query: 65  NL--------NVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQ 116
            +        +  R  V+ALVL PTRELADQVA  ++   +   N++   + GGM M PQ
Sbjct: 64  RMLKHENASTSPARHPVRALVLLPTRELADQVAEQVKLYAKYT-NLRSTVVFGGMDMKPQ 122

Query: 117 IGSLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAP 176
              L+ G  +LV TPGR+LDH+      L+++  +VLDEADRML++GF   L+ I++  P
Sbjct: 123 TAELKKGVEVLVATPGRLLDHIEAKNCVLNQVEYVVLDEADRMLDIGFLPDLQRILSYLP 182

Query: 177 AERQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALE 235
            +R TLLFSAT+   I+++A S  ++ + I+V  ++ T+S + Q+FY+VE    R   L+
Sbjct: 183 KQRTTLLFSATFSPEIKRLANSYLQDPVTIEVARSNATASTVEQHFYRVEDDDKRG-ILK 241

Query: 236 TLLLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSIS 295
            +L       + VF N+K     +A +L + G +   LHGD  Q ER +AL  F   ++ 
Sbjct: 242 QILRERGLKQAFVFVNSKLGCARLARSLEREGLNTTALHGDKSQDERLKALEAFKTGAVD 301

Query: 296 ILVATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRV 355
           +LV TDVAARGLD+ ++ AVFN+D+  + E +VHRIGRTGRAG+ GLA SF S  ++  +
Sbjct: 302 LLVCTDVAARGLDIKDVPAVFNFDIPFNAEDYVHRIGRTGRAGASGLAVSFVSGRDTRLM 361

Query: 356 AQIDEYMDIAIEPSTL 371
             +++ +   +E   L
Sbjct: 362 GDLEKLLGKKLELEAL 377