Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  253 bits (645), Expect = 1e-71
 Identities = 149/387 (38%), Positives = 225/387 (58%), Gaps = 13/387 (3%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SF +L L P++L  +   G+   TPIQ Q++PA+L+G+D++   +TG+GKTA F L +L 
Sbjct: 2   SFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQ 61

Query: 65  NLNVK------RFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIG 118
           +L         R  V+AL+L PTRELA Q+  ++R   + + NI+ L + GG+ + PQ+ 
Sbjct: 62  HLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMM 120

Query: 119 SLEHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAE 178
            L  G  +LV TPGR+LD   ++ + L ++  LVLDEADRML+MGF   +  ++A  PA+
Sbjct: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180

Query: 179 RQTLLFSATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETL 237
           RQ LLFSAT+   I+ +A+ + RN L I+V   +  S  + Q+ + V+    R E L  +
Sbjct: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKR-ELLSQM 239

Query: 238 LLHHQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISIL 297
           +        +VF  TK    ++A+ L++ G     +HG+  Q  R +AL  F +  I +L
Sbjct: 240 IGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVL 299

Query: 298 VATDVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQ 357
           VATD+AARGLD++ L  V NY+L   PE +VHRIGRTGRA + G A S    +E   +  
Sbjct: 300 VATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRD 359

Query: 358 IDEYMDIAI----EPSTLPQPAAGARP 380
           I++ +   I     P   P P+  A P
Sbjct: 360 IEKLLKKEIPRITTPGYEPDPSIKAEP 386