Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., ATP-dependent 23S rRNA helicase DbpA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  466 bits (1199), Expect = e-136
 Identities = 248/459 (54%), Positives = 317/459 (69%), Gaps = 7/459 (1%)

Query: 5   SFAALNLKPEL-LANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           +F+ LN+ P   L NL  +G+  MTP+QA +LP IL G DV  Q +TGSGKTAAFGLG+L
Sbjct: 3   TFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVRVQARTGSGKTAAFGLGLL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
             ++V  F+ QALVLCPTRELADQVA ++R L R + N K+LTLCGG P G Q  SL+H 
Sbjct: 63  HRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGAQRDSLQHA 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+V TPGR+LDHL K+ + L  L+ LV+DEADRML+MGF +A++ +I  APA RQTLL
Sbjct: 123 PHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLDMGFSDAIDEVIRFAPATRQTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243
           FSAT+P +I  I+  V +  + I+++      +I Q F++   +  +   L+TLL  HQP
Sbjct: 183 FSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQQFFET-SAHEKISLLQTLLSQHQP 241

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            S VVFCNTK++ Q V DAL+  G S + LHGD+EQR+RDQ LV+FAN S  ILVATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLEQRDRDQTLVRFANGSARILVATDVA 301

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLD+ +L+ V NY+L+ DPEVHVHRIGRT RAGS GLA SF +  E+ R   + E + 
Sbjct: 302 ARGLDIKSLELVVNYELAWDPEVHVHRIGRTARAGSSGLAISFCAPEEAQRANILSEMLQ 361

Query: 364 IAIEPSTLP--QPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKI 421
           + +     P  QP     P AA M T+ IDGGKK K+RPGDILGALT D  L    IGKI
Sbjct: 362 LKLNWLNAPARQPLL---PLAAEMATLCIDGGKKAKMRPGDILGALTGDIGLDGADIGKI 418

Query: 422 NLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
           N+ PM  YVAV + +A KA  ++ NGK+KG+  R RLLK
Sbjct: 419 NVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKSCRVRLLK 457