Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  278 bits (712), Expect = 3e-79
 Identities = 158/369 (42%), Positives = 224/369 (60%), Gaps = 2/369 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +FA L LK  +L  L  +G+   +PIQA+ +P +L G+DV+G  +TGSGKTAAF L +L+
Sbjct: 7   TFADLGLKAPILEALTDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
           NL+ +    Q LVL PTRELA QVA  +    + +  + V+ L GG     Q+ +L  G 
Sbjct: 67  NLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            I+VGTPGR+LDHL +  +DLS+L+ LVLDEAD ML MGF E +E I+A  P   QT LF
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P +I +I +   +    ++++++  T   I Q ++ V G   ++EAL   L     
Sbjct: 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMR-KNEALVRFLEAEDF 245

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            ++++F  TK     VA+AL +SG++   L+GDM Q  R+Q L +  +  + IL+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G A  F  + E   +  I+  M 
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 364 IAIEPSTLP 372
           + I    LP
Sbjct: 366 LTIPEVELP 374



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 18/76 (23%), Positives = 40/76 (52%)

Query: 384 NMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALNK 443
           +M   +I+ G+ D V    I+GA+ ++G++++ +IG I LF   + + + K +  + L  
Sbjct: 485 DMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQH 544

Query: 444 IANGKMKGRQFRARLL 459
               ++  +    +LL
Sbjct: 545 FTRTRILNKPMNMQLL 560