Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., ATP-dependent RNA helicase, specific for 23S rRNA (NCBI) from Escherichia coli BW25113

 Score =  468 bits (1205), Expect = e-136
 Identities = 249/457 (54%), Positives = 319/457 (69%), Gaps = 3/457 (0%)

Query: 5   SFAALN-LKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           +F+ LN L P  L NL  +G+ TMTP+QA +LPAIL G+DV  Q KTGSGKTAAFGLG+L
Sbjct: 3   AFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVRVQAKTGSGKTAAFGLGLL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
             ++   F+ QALVLCPTRELADQVA ++R L R + N K+LTLCGG P G Q  SL+H 
Sbjct: 63  QQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTKILTLCGGQPFGMQRDSLQHA 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+V TPGR+LDHL K  + L  LNTLV+DEADRML+MGF +A++ +I  APA RQTLL
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLDMGFSDAIDDVIRFAPASRQTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243
           FSAT+P +I  I+  V R+ L I++++T     I Q FY+   S  +   L+ LL  HQP
Sbjct: 183 FSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQQFYET-SSKGKIPLLQRLLSLHQP 241

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
           +S VVFCNTK++ Q V DAL++ G S + LHGD+EQR+RDQ LV+FAN S  +LVATDVA
Sbjct: 242 SSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLD+ +L+ V N++L+ DPEVHVHRIGRT RAG+ GLA SF +  E+ R   I + + 
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISFCAPEEAQRANIISDMLQ 361

Query: 364 IAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
           I +   T P  ++ A    A M T+ IDGGKK K+RPGD+LGALT D  L    IGKI +
Sbjct: 362 IKLNWQTPPANSSIA-TLEAEMATLCIDGGKKAKMRPGDVLGALTGDIGLDGADIGKIAV 420

Query: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
            P   YVAV + +A KA  ++  GK+KG+  R RLLK
Sbjct: 421 HPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCRVRLLK 457