Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 619 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Erwinia tracheiphila SCR3

 Score =  273 bits (697), Expect = 2e-77
 Identities = 152/369 (41%), Positives = 221/369 (59%), Gaps = 3/369 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F+ L L  ++L +L  MG+   +PIQA+ +P +L G+DV+G  +TGSGKTAAF L +L+
Sbjct: 7   TFSDLGLNADILESLNGMGYVKPSPIQAECIPHLLAGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
           N++      Q LVL PTRELA QVA  +    + +  + V+ L GG     Q+ +L  G 
Sbjct: 67  NIDAGVKAPQILVLAPTRELAVQVAEAVTGFSKHMRGLSVVALYGGQRYDVQLRALRQGP 126

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            ++VGTPGR+LDHL +  +DLS L  LVLDEAD ML MGF E +E I+A  P   QT LF
Sbjct: 127 QVVVGTPGRLLDHLKRGTLDLSNLRGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALF 186

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P +I +I +   ++   ++++++  T   I Q ++   G   + +AL   L     
Sbjct: 187 SATMPEAIRRITKRFMKDPQEVRIQSSITTRPDISQSYWTAYG--RKTDALVRFLEAEDF 244

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            ++++F  TK     VA+AL +SG++   L+GDM Q  R+Q L +  +  + IL+ATDVA
Sbjct: 245 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 304

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V N+D+  D E +VHRIGRTGRAG  G A  F  + E   +  I+  M 
Sbjct: 305 ARGLDVERISLVVNFDIPMDAESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 364

Query: 364 IAIEPSTLP 372
           + I    LP
Sbjct: 365 LTIPEVELP 373



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 9/77 (11%)

Query: 384 NMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKI------- 436
           +M   +ID G+ D V    I+GA+ ++G++++ +IG I LF   + + + K +       
Sbjct: 474 DMEVYRIDVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFGTHSTIELPKGMPGDILQH 533

Query: 437 --ATKALNKIANGKMKG 451
              T+ LNK  N ++ G
Sbjct: 534 FTRTRILNKPMNMQLIG 550