Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., ATP-dependent RNA helicase DbpA from Erwinia tracheiphila SCR3

 Score =  442 bits (1137), Expect = e-128
 Identities = 237/464 (51%), Positives = 310/464 (66%), Gaps = 15/464 (3%)

Query: 5   SFAALNLKP-ELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           SF+ L L     +ANL  +G+  MTP+QA SLPAIL G+DV  Q KTGSGKT AFGLGV+
Sbjct: 3   SFSTLTLLSISQIANLNELGYYNMTPVQAASLPAILAGRDVRAQAKTGSGKTVAFGLGVM 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
            ++N  +F  Q L++CPTRELA+QVA ++R L RA  N+KVLTLCGG P   Q  SL   
Sbjct: 63  QHINAAQFATQGLIICPTRELAEQVAEEMRRLARATANMKVLTLCGGQPASAQRDSLARA 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+VGTPGRI+DHL ++ + L +L TLVLDEADRMLEMGF++ +E++I   P+ RQTLL
Sbjct: 123 PHIVVGTPGRIVDHLKRETLKLDQLKTLVLDEADRMLEMGFRDEIESLINYCPSRRQTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243
           FSAT+P  I+QI++ +  +   ++ E T D S+I Q+FY+V     +  AL  LL   QP
Sbjct: 183 FSATWPHDIKQISRHLQCDPTTVETETTPDLSNIEQFFYEV-SPREKPAALIGLLSERQP 241

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
           +S VVFCNTKRE   +ADAL     S + L+GD+EQRER+  L++F N S  +L+ATDVA
Sbjct: 242 SSCVVFCNTKRECNEIADALESCQISSLALNGDLEQREREHVLIRFVNGSCRVLIATDVA 301

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYM- 362
           ARGLD+  L  V NY LS DPEVHVHRIGRT RAG KG+A SF +  E  R   +++++ 
Sbjct: 302 ARGLDIKLLAMVVNYQLSFDPEVHVHRIGRTARAGEKGIAISFVAPGEMTRALALEDFLQ 361

Query: 363 ------DIAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAE 416
                 D+ +  S  P       P  A   T+ IDGGKK K+RPGDILGALT +  L +E
Sbjct: 362 QKMLWRDVNLLKSFTPY------PLLAENATLSIDGGKKAKIRPGDILGALTGEAGLQSE 415

Query: 417 HIGKINLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
            IGKI +    A+VAV   +A KA+ ++   K+KG+  RARLL+
Sbjct: 416 SIGKITVTSSHAFVAVRLDVARKAVRQLQQVKIKGKACRARLLE 459