Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 631 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  280 bits (716), Expect = 1e-79
 Identities = 157/369 (42%), Positives = 225/369 (60%), Gaps = 2/369 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +FA L LK  +L  L  +G+   +PIQA+ +P +L G+DV+G  +TGSGKTAAF L +L+
Sbjct: 7   TFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLSGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
           N++      Q LVL PTRELA QVA  +    + +  + V+ L GG     Q+ +L  G 
Sbjct: 67  NIDPDLRAPQILVLAPTRELAVQVAEAMTEFSKHMRGVNVVALYGGQRYDVQLRALRQGP 126

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            I+VGTPGR+LDHL +  +DLS+L+ LVLDEAD ML MGF E +E I+A  P   QT LF
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPDGHQTALF 186

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P +I +I +   ++   ++++++  T   I Q ++ V G   ++EAL   L     
Sbjct: 187 SATMPEAIRRITKRFMKDPQEVRIQSSVTTRPDISQSYWSVYG-MRKNEALVRFLEAEDF 245

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            ++++F  TK     VA+AL +SG++   L+GDM Q  R+Q L +  +  + IL+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G A  F  + E   +  I+  M 
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 364 IAIEPSTLP 372
           + I  + LP
Sbjct: 366 LTIPEADLP 374



 Score = 38.1 bits (87), Expect = 8e-07
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 9/79 (11%)

Query: 382 AANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKI----- 436
           A +M   +I+ G+ D V    I+GA+ ++G++++ +IG I LF   + + + K +     
Sbjct: 493 AGDMELYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVL 552

Query: 437 ----ATKALNKIANGKMKG 451
                T+ LNK  N ++ G
Sbjct: 553 QHFTRTRILNKPMNMQLMG 571