Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., Superfamily II DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  466 bits (1198), Expect = e-136
 Identities = 242/457 (52%), Positives = 318/457 (69%), Gaps = 3/457 (0%)

Query: 5   SFAALNLKPEL-LANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           +F+ LN+ P   L NL  +G+ TMTP+QA +LPAIL+G+DV  Q KTGSGKTAAFGLG+L
Sbjct: 3   AFSTLNVLPAAQLDNLNELGYLTMTPVQAAALPAILEGRDVRVQAKTGSGKTAAFGLGLL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
            +++   F+ Q+LVLCPTRELADQVA ++R L R + N K+LTLCGG P G Q  SL+H 
Sbjct: 63  QHIDAALFQTQSLVLCPTRELADQVAGELRRLARCLPNTKILTLCGGQPFGAQRDSLQHA 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+V TPGR+LDHL K  + L  L TLV+DEADRML+MGF +A++ +I  APA+RQTLL
Sbjct: 123 PHIIVATPGRLLDHLQKGTVSLDALQTLVMDEADRMLDMGFSDAIDEVIHFAPADRQTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243
           FSAT+P +I  I+  V +N L I++++     +I Q F++      +   L+ LL  HQP
Sbjct: 183 FSATWPEAIAAISGRVQKNPLTIEIDSVDALPAIEQQFFET-SQQGKISLLQKLLSQHQP 241

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            S VVFCNTK++ Q+V DAL+ +G S + LHGD+EQR+RDQ LV+FAN S  +LVATDVA
Sbjct: 242 ASCVVFCNTKKDCQSVCDALNAAGQSALSLHGDLEQRDRDQTLVRFANGSARVLVATDVA 301

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLD+ +L+ V N++L+ DPEVHVHRIGRT RAG+ GLA S  +  E+ R   + E + 
Sbjct: 302 ARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAGNSGLAISLCAPEEAQRANILSEMLQ 361

Query: 364 IAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
           I +     P  +    P  A M T+ IDGGKK K+RPGD+LGALT D  L    IGKI +
Sbjct: 362 IKLNWMNAP-ASVSLVPLEAEMATLCIDGGKKAKMRPGDVLGALTGDVGLDGADIGKIAV 420

Query: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
            P   YVAV + +A KA  ++ NGK+KG+  R RLLK
Sbjct: 421 HPAHVYVAVRQAVAHKAWKQLQNGKIKGKTCRVRLLK 457