Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., ATP-dependent RNA helicase DbpA from Dickeya dianthicola ME23

 Score =  468 bits (1203), Expect = e-136
 Identities = 252/457 (55%), Positives = 312/457 (68%), Gaps = 3/457 (0%)

Query: 5   SFAALNLKP-ELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           SFA LN  P ELL  L  +G+ TMTPIQA +LPAIL G+DV  Q KTGSGKTAAFGLG+L
Sbjct: 3   SFAELNALPAELLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
            +L+  +F  Q+LVLCPTRELADQVA ++R L R + NIKVL LCGG+P   Q  SL H 
Sbjct: 63  QHLDAGQFNTQSLVLCPTRELADQVANELRRLARYMPNIKVLALCGGVPFSIQRDSLIHA 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+V TPGR+LDHL KD I    L TLVLDEADRML+MGF +A+  II   PA+RQTLL
Sbjct: 123 PHIIVATPGRLLDHLKKDTISFDALQTLVLDEADRMLDMGFADAINEIIGHIPAQRQTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243
           FSAT+P +I  I+  + R+ L I +++  +  ++ Q FY+V  +   D  L+ LL   QP
Sbjct: 183 FSATWPDAIAAISHRIQRDPLTIAIDSVDELPAVEQQFYEVSRNGKLD-LLQKLLSREQP 241

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            S VVFCNTK++ Q V DAL  S  SV+ LHGDMEQR+RDQ LV+FAN S  +LVATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVA 301

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLD+  L+ V NY+LS DPEVHVHRIGRT RAG  GLA S  +  E+ R   ++E ++
Sbjct: 302 ARGLDIKALEMVINYELSWDPEVHVHRIGRTARAGESGLAISLCAPEEAQRANALEEMLN 361

Query: 364 IAIEPSTLPQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINL 423
           + +    LP       P  A M T+ IDGGKK K+RPGDILGALT D  L    IGKI +
Sbjct: 362 MKLNWHPLP-TGLHITPLEATMATLCIDGGKKAKMRPGDILGALTGDMGLDGADIGKIAI 420

Query: 424 FPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
            PM AYVAV + +A     ++  GK+KG+  + RLLK
Sbjct: 421 HPMHAYVAVKQSVARHVWKQLQQGKIKGKAVKVRLLK 457