Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 628 a.a., DEAD/DEAH family ATP-dependent RNA helicase from Dickeya dianthicola ME23

 Score =  287 bits (734), Expect = 8e-82
 Identities = 173/416 (41%), Positives = 242/416 (58%), Gaps = 7/416 (1%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           SFA+L L   +L+ L  +G+   +PIQA+ +P +L G+DV+G  +TGSGKTAAF L +L+
Sbjct: 7   SFASLGLSAPILSALSELGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLN 66

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
           N+  +    Q LVL PTRELA QVA       + +  + V+ L GG     Q+ +L  G 
Sbjct: 67  NIKAELKAPQLLVLAPTRELAVQVAEACNEFSKHMQGVNVVALYGGQRYDVQLRALRQGP 126

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            I+VGTPGR+LDHL +  +DLS L+ LVLDEAD ML MGF E +E I+A  PAE QT LF
Sbjct: 127 QIVVGTPGRLLDHLKRGTLDLSNLSGLVLDEADEMLRMGFIEDVENIMAQIPAEHQTALF 186

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTS-SIRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P +I +I +   ++   ++++++  T   I Q ++ V G   ++EAL   L     
Sbjct: 187 SATMPEAIRRITRRFMKDPQEVRIQSSVTTRPDISQSYWTVYGMR-KNEALIRFLEAEDF 245

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            ++++F  TK     VA+AL +SG++   L+GDM Q  R+Q L +  +  + IL+ATDVA
Sbjct: 246 DAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVA 305

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V NYD+  D E +VHRIGRTGRAG  G A  F  + E   +  I+  M 
Sbjct: 306 ARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365

Query: 364 IAIEPSTLPQ-PAAGARPYA--ANMVTIQIDGGKKDKVRPGDILGALTSDGELTAE 416
           + I    LP     G R  A  A  V  Q++    D  R   +LG L    EL  E
Sbjct: 366 LTIPEVDLPNAELLGQRRLAQFAAKVQQQLESSDLDMYRA--LLGKLRPQEELDIE 419



 Score = 38.9 bits (89), Expect = 5e-07
 Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 9/88 (10%)

Query: 373 QPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAV 432
           +PA   R     M   +I+ G+ D V    I+GA+ ++G++++ +IG I LF   + + +
Sbjct: 475 RPARRERRDVGEMDLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIEL 534

Query: 433 HKKI---------ATKALNKIANGKMKG 451
            K +          T+ LNK  N ++ G
Sbjct: 535 PKGMPGDLLSHFTRTRILNKPMNMQLMG 562