Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 457 a.a., ATP-dependent RNA helicase DbpA from Dickeya dadantii 3937

 Score =  474 bits (1219), Expect = e-138
 Identities = 255/459 (55%), Positives = 318/459 (69%), Gaps = 7/459 (1%)

Query: 5   SFAALNLKP-ELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVL 63
           SFA LN+ P E L  L  +G+ TMTPIQA +LPAIL G+DV  Q KTGSGKTAAFGLG+L
Sbjct: 3   SFAELNVLPAEQLTTLNELGYLTMTPIQAAALPAILAGKDVRAQAKTGSGKTAAFGLGLL 62

Query: 64  SNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHG 123
             L+  +F  Q+LVLCPTRELADQVA ++R L R + NIKVLTLCGG+P   Q  SL H 
Sbjct: 63  QQLDAGQFNTQSLVLCPTRELADQVANELRRLARYLPNIKVLTLCGGVPFSIQRDSLIHA 122

Query: 124 AHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLL 183
            HI+V TPGR+LDHL K+ + L  L TLVLDEADRML+MGF +A++ +IA  PA+RQTLL
Sbjct: 123 PHIIVATPGRLLDHLKKETVSLDALQTLVLDEADRMLDMGFADAIDEVIAHVPAQRQTLL 182

Query: 184 FSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLHHQP 243
           FSAT+P +I  I+  + R+ L I ++   +  +I Q FY+V  S   D  L+ LL   QP
Sbjct: 183 FSATWPDAIAAISHRIQRDPLTIAIDTVDELPAIEQQFYEVSRSGKID-LLQKLLSREQP 241

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
            S VVFCNTK++ Q V DAL  S  SV+ LHGDMEQR+RDQ LV+FAN S  +LVATDVA
Sbjct: 242 ASCVVFCNTKKDCQAVYDALTDSNQSVLALHGDMEQRDRDQTLVRFANGSSRVLVATDVA 301

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLD+  L+ V NY+LS DPEVH+HRIGRT RAG  GLA S  +  E+ R   ++E ++
Sbjct: 302 ARGLDIKALEMVINYELSWDPEVHIHRIGRTARAGESGLAISLCAPEEAQRANALEEMLN 361

Query: 364 IAIEPSTLPQPAAGAR--PYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKI 421
           + +   +LP    G R  P  A M T+ IDGGKK K+RPGDILGALT D  L    IGKI
Sbjct: 362 MKLNWHSLP---TGLRITPLEATMATLCIDGGKKAKMRPGDILGALTGDMGLDGADIGKI 418

Query: 422 NLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLLK 460
            + PM AYVAV + +A  A  ++  GK+KG+  + RLLK
Sbjct: 419 TIHPMHAYVAVKQSVARHAWKQLQQGKIKGKAVKVRLLK 457