Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 567 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  294 bits (752), Expect = 6e-84
 Identities = 156/376 (41%), Positives = 231/376 (61%), Gaps = 3/376 (0%)

Query: 2   NANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLG 61
           N   FA L +  E+L  +E MG+   + IQAQS+P +L+G DVIGQ +TG+GKTA+FG+ 
Sbjct: 3   NETLFADLGISAEILQAVEGMGYTQPSEIQAQSIPLMLEGHDVIGQAQTGTGKTASFGIP 62

Query: 62  VLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLE 121
           ++  ++    + QAL+LCPTRELA QV  +I  L +    I    + GG  +  QI +L+
Sbjct: 63  IVDRVDSSSKQPQALILCPTRELAVQVEGEITKLAKYKKGIFSTAIYGGEAIDRQIRTLK 122

Query: 122 HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQT 181
            G  I+VGTPGR++DH+++  + L  + T+VLDEAD ML+MGF+E +E +++  P +RQT
Sbjct: 123 RGVQIVVGTPGRVMDHMNRGTLKLDTVKTIVLDEADEMLDMGFREDIETVLSQMPEDRQT 182

Query: 182 LLFSATYPASIEQIAQSVTRNALMIKVEATHDT-SSIRQYFYKVEGSAARDEALETLLLH 240
           + FSAT    I  + +    N  ++K++    T  +I Q +Y+V+    + E +  L+  
Sbjct: 183 IFFSATMAKPIMDLTRKYQTNPEIVKIQRKELTVENISQVYYEVK-PPLKMELITRLINI 241

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
           HQ    VVFCNTKR    V + L   G     LHGD+ Q +RD+ + +F     ++LVAT
Sbjct: 242 HQFNLGVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFRKGHCTVLVAT 301

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNES-YRVAQID 359
           DVAARG+DVDN++ VFNYDL  D E +VHRIGRTGRAG  G+A SF +  +  +R+  ++
Sbjct: 302 DVAARGIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITGRKDIFRLKDLE 361

Query: 360 EYMDIAIEPSTLPQPA 375
            Y+   +     P  A
Sbjct: 362 RYIKTTLTKMNPPSVA 377



 Score = 52.4 bits (124), Expect = 4e-11
 Identities = 26/78 (33%), Positives = 45/78 (57%)

Query: 383 ANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVAVHKKIATKALN 442
           ANM  + ++ GKKD++RP DI+GA+  +  ++   IG I++F   ++V V  K A+  +N
Sbjct: 489 ANMSRLFLNLGKKDRIRPNDIVGAIAGEAGISGRLIGGIDIFDNFSFVDVPSKDASHVIN 548

Query: 443 KIANGKMKGRQFRARLLK 460
            +    +KG+     L K
Sbjct: 549 VMKRNTIKGKPVNMELSK 566