Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 459 a.a., ATP-independent RNA helicase DbpA from Alteromonas macleodii MIT1002

 Score =  412 bits (1060), Expect = e-120
 Identities = 213/465 (45%), Positives = 301/465 (64%), Gaps = 12/465 (2%)

Query: 1   MNANSFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGL 60
           M   +   L++ P +   L++ G   ++PIQAQSLP  L+G+DVIGQ +TGSGKT  F +
Sbjct: 1   MTVETVKHLDINPAITKALDSQGIYQLSPIQAQSLPEALQGKDVIGQAQTGSGKTLCFVI 60

Query: 61  GVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSL 120
             L ++ V  F  QA++LCPTRELADQVA   RT  + I NIKV TLCGG PMGPQI SL
Sbjct: 61  PALQHVEVNDFTTQAIILCPTRELADQVAQQCRTAAKNIGNIKVTTLCGGQPMGPQIQSL 120

Query: 121 EHGAHILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQ 180
           +H  HI+VGTPGR++DH+ K RIDLS +   VLDEADRML+MGF++ L  I    P + Q
Sbjct: 121 KHSPHIIVGTPGRVMDHVEKRRIDLSNVKLRVLDEADRMLDMGFEDDLRIIFGQTPKQVQ 180

Query: 181 TLLFSATYPASIEQIAQSVTRNALMIKVEATHDTSSIRQYFYKVEGSAARDEALETLLLH 240
           TLLFSAT+   IE++A+    N +  KVE+     +I Q  Y V     R +AL+ +L H
Sbjct: 181 TLLFSATFTEQIERVAKQYLHNPVTCKVESQDSKPAITQLGYNVL-PHTRTQALKAVLTH 239

Query: 241 HQPTSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVAT 300
           +QP +++VFCN K +V  V + L + GFS   L GD+EQ +R   L+QFA+ ++ +LVAT
Sbjct: 240 YQPKNAIVFCNRKVQVNEVVEELIEDGFSAAGLQGDLEQHQRTSVLMQFASDALQVLVAT 299

Query: 301 DVAARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDE 360
           DVAARGLD+D++  V NY +S +PE H+HRIGRT RAG++G+A +  SD+E + + +I+ 
Sbjct: 300 DVAARGLDIDDVACVINYTVSEEPETHIHRIGRTARAGAQGMAVTLVSDDEEHFLRKIE- 358

Query: 361 YMDIAIEPSTLPQPAAGARPYAANMVT------IQIDGGKKDKVRPGDILGALTSDGELT 414
                ++ S +P   A +  +  N +T      I +  GKK+K+RPGD++GALT D  + 
Sbjct: 359 ----VLQESDIPLKGAQSLRFHKNKITQPEFTCISLSAGKKEKLRPGDLVGALTKDAGIP 414

Query: 415 AEHIGKINLFPMRAYVAVHKKIATKALNKIANGKMKGRQFRARLL 459
            + +GKI +    ++VAV  +   KA+     GK+KG++ RAR L
Sbjct: 415 GDDLGKIKVQNSMSFVAVKTRSVKKAMAHFREGKIKGKRIRARKL 459