Pairwise Alignments

Query, 460 a.a., ATP-dependent RNA helicase DbpA from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Cold-shock DEAD box protein A from Alteromonas macleodii MIT1002

 Score =  277 bits (709), Expect = 6e-79
 Identities = 159/369 (43%), Positives = 224/369 (60%), Gaps = 2/369 (0%)

Query: 5   SFAALNLKPELLANLETMGFATMTPIQAQSLPAILKGQDVIGQGKTGSGKTAAFGLGVLS 64
           +F  LNL   +L  LE +G+   +PIQA+S+P +L+G D++GQ +TG+GKTAAF L +L+
Sbjct: 8   TFKDLNLPEPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAAFALPMLA 67

Query: 65  NLNVKRFRVQALVLCPTRELADQVATDIRTLGRAIHNIKVLTLCGGMPMGPQIGSLEHGA 124
           N++ ++ + Q LVL PTRELA QVA   +        IKVL + GG     QI  L+ G 
Sbjct: 68  NIDPEQRKPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQIRQLKRGV 127

Query: 125 HILVGTPGRILDHLSKDRIDLSELNTLVLDEADRMLEMGFQEALEAIIAAAPAERQTLLF 184
            ++VGTPGRI+DH+ +  +DLSEL  LVLDEAD ML MGF + +E I++ AP ERQT LF
Sbjct: 128 QVVVGTPGRIIDHIKRKTLDLSELKFLVLDEADEMLRMGFIDDVELILSHAPEERQTALF 187

Query: 185 SATYPASIEQIAQSVTRNALMIKVEATHDTSS-IRQYFYKVEGSAARDEALETLLLHHQP 243
           SAT P  I++I Q   ++   IK+ +   T+S IRQ + ++     + EAL  ++     
Sbjct: 188 SATMPGPIKKITQRYLKDPKHIKIASKVSTASTIRQRYCQI-APHHKLEALTRIMEVEVF 246

Query: 244 TSSVVFCNTKREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVA 303
              ++F  TK     +AD L   G+ V  L+GD+ Q  R++ + +     I ILVATDV 
Sbjct: 247 DGMIIFVRTKTATVELADKLSARGYDVEPLNGDIPQAARERTVEKLKQGKIDILVATDVV 306

Query: 304 ARGLDVDNLDAVFNYDLSRDPEVHVHRIGRTGRAGSKGLAFSFFSDNESYRVAQIDEYMD 363
           ARGLDV+ +  V NYD+  D E +VHRIGRTGRAG +G A  F S  E   +  I++   
Sbjct: 307 ARGLDVERVSHVINYDIPYDSESYVHRIGRTGRAGRQGDAILFISHREKRLLFSIEKTTK 366

Query: 364 IAIEPSTLP 372
             IE   +P
Sbjct: 367 QPIEAMPIP 375



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 18/86 (20%), Positives = 43/86 (50%)

Query: 372 PQPAAGARPYAANMVTIQIDGGKKDKVRPGDILGALTSDGELTAEHIGKINLFPMRAYVA 431
           P+   G R     M   +I+ G     +PG+I+GA+ ++  + ++HIG I ++   + V 
Sbjct: 469 PRVPRGNRKPEEGMQRFRIEVGHVHGAKPGNIVGAIANEANINSKHIGAIEIYDNFSTVD 528

Query: 432 VHKKIATKALNKIANGKMKGRQFRAR 457
           + + +  +  + +   ++ G++   R
Sbjct: 529 LPEGMPKETRDTLQGTRVAGQRLNIR 554