Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

 Score =  476 bits (1226), Expect = e-139
 Identities = 235/419 (56%), Positives = 316/419 (75%), Gaps = 3/419 (0%)

Query: 4   ILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRSG 63
           +  LA  SL NR+ TA+LT   +A++V LLL VER+R +A+ SFA+TISGTDLIVG RSG
Sbjct: 3   LFRLAMASLANRRFTAILTAFAIALSVCLLLAVERVRVEARNSFASTISGTDLIVGARSG 62

Query: 64  QVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFEH 123
            VNLLLYSVFRIGNATNNI W S++ F+  P VKWAIPISLGDSH+G+RV+GTN SYFEH
Sbjct: 63  SVNLLLYSVFRIGNATNNIRWDSFEHFAASPQVKWAIPISLGDSHRGYRVMGTNESYFEH 122

Query: 124 YRYGSKQPLTLSQGREF-NGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLP 182
           Y+YG KQ L L+ GR F    FE V+GA+VA AL Y++G ++++AHG++ V   +HD+ P
Sbjct: 123 YQYGRKQNLELASGRAFATDPFEVVLGAEVADALHYKLGDKLVLAHGVAVVSLVKHDDKP 182

Query: 183 FTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESG--ANLGHQPSAEQLAQRDFTPKQIT 240
           FTVVGIL  TGTPVD+T+H+SL  +EAIH+ W +G  A    + SA+Q    D TP+ IT
Sbjct: 183 FTVVGILKRTGTPVDRTLHISLGGMEAIHIDWHNGVPAQGKGRISADQARNMDLTPQAIT 242

Query: 241 AMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVVA 300
           A ++GL +KI TFALQR+IN++  EP+ AI+PGVAL ELW MM  AE+AL  +S+FVV+ 
Sbjct: 243 AFMLGLNNKISTFALQREINEFRGEPMLAILPGVALQELWSMMGTAEKALFVISLFVVLT 302

Query: 301 GLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLYLLL 360
           GL+GML+++LTSL ERRREM+ILR++GARP H+  LL+ EA  L L G++ GV +LY+ +
Sbjct: 303 GLIGMLTAILTSLNERRREMAILRSVGARPWHIATLLIFEAFALALSGVVAGVGLLYVCI 362

Query: 361 ALAAPLIASQYGIQIALAGLTAYEWQLLGCVQLAGIVIGFIPALRAYRQSLSDGMTIRL 419
           A +   + + YG+ + ++  + YEW LL  +  A +++G +PA RAYRQSL+DG++IRL
Sbjct: 363 AASRGYLQANYGLDLPMSWPSEYEWTLLAGILAAALLMGSVPAWRAYRQSLADGLSIRL 421