Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 421 a.a., putative ABC efflux transporter, permease protein from Pseudomonas putida KT2440

 Score =  480 bits (1236), Expect = e-140
 Identities = 242/419 (57%), Positives = 316/419 (75%), Gaps = 3/419 (0%)

Query: 4   ILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRSG 63
           +L LA  SL NR+ TA LT   +A++V LLL VER+RT+A+ SFA+TISGTDLIVG RSG
Sbjct: 3   LLRLALASLANRRFTAFLTAFAIALSVCLLLAVERVRTEARASFASTISGTDLIVGARSG 62

Query: 64  QVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFEH 123
            VNLLLYSVFRIGNATNNI W S+Q ++Q P VKWAIPISLGDSH+G+RV+GT   YF H
Sbjct: 63  SVNLLLYSVFRIGNATNNIRWDSFQHYAQDPRVKWAIPISLGDSHRGYRVMGTTTDYFSH 122

Query: 124 YRYGSKQPLTLSQGREF-NGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLP 182
           Y+YG +Q L LSQGREF N  FE V+GA+VA+AL Y++G ++++AHG++ +   +HD+ P
Sbjct: 123 YQYGRRQHLQLSQGREFANDPFEVVLGAEVAEALHYKLGDKLVLAHGVAAISLVKHDDKP 182

Query: 183 FTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESG--ANLGHQPSAEQLAQRDFTPKQIT 240
           FTVVG+L  TGTPVD+T+H+SL  +EAIH+ W +G  A    + SAEQ    D  P  IT
Sbjct: 183 FTVVGVLKRTGTPVDRTLHISLGGMEAIHIDWHNGVPARGAGRISAEQARTMDLQPAAIT 242

Query: 241 AMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVVA 300
           A ++GL SKI TF+LQR+IN+Y  EPL AI+PGVAL ELW +M  AEQAL  VS+FVV+ 
Sbjct: 243 AFMLGLNSKIATFSLQREINEYRSEPLLAILPGVALQELWSLMGTAEQALFVVSLFVVLT 302

Query: 301 GLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLYLLL 360
           GL+GML+++LTSL ERRREM+ILR++GARP H+  LLV EA  L  VGI+ G+ +LY  +
Sbjct: 303 GLIGMLTAILTSLNERRREMAILRSVGARPWHIAGLLVLEALSLASVGIVAGLGLLYAGI 362

Query: 361 ALAAPLIASQYGIQIALAGLTAYEWQLLGCVQLAGIVIGFIPALRAYRQSLSDGMTIRL 419
           ALA   + + YG+ + LA  + +EW LL  +  A +++G +PA RAYRQSL+DG++I L
Sbjct: 363 ALAQGYVQANYGLYLPLALPSTHEWTLLAIILGAALLMGSVPAWRAYRQSLADGLSIHL 421