Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., ABC-type antimicrobial peptide transport system, permease component from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  198 bits (504), Expect = 2e-55
 Identities = 129/416 (31%), Positives = 217/416 (52%), Gaps = 12/416 (2%)

Query: 4   ILNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTISGTDLIVGGRSG 63
           +L L+W+ L +R   + L +L +A+ +  +  V   R Q   +F   ++G D +VG +  
Sbjct: 3   VLTLSWRYLWSRPLASALNLLLLALGLASMAFVLIARDQVDRAFERDLAGIDAVVGAKGS 62

Query: 64  QVNLLLYSVFRIGNATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTNHSYFEH 123
            + L+L  VF +     NI     ++ ++HP V   IP+SLGD+  GFR++GT H Y  H
Sbjct: 63  PMQLILAGVFHLDVPPGNIPLAEARQLAEHPQVAQLIPLSLGDNLGGFRIVGTTHDYPAH 122

Query: 124 YRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIIIAHGISDVGFSRHDNLPF 183
             YG++    L+QG  +    E V+GA VA   G +VG     AHG+  VG S H   P+
Sbjct: 123 --YGAR----LAQGVLWQAPLEAVLGAQVAARTGLKVGQAFEGAHGLG-VGGSSHGETPY 175

Query: 184 TVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSAEQLAQRDFTPKQITAML 243
           TV G+LAP G  +D+ V  + E++  +H    +GAN+     AE LA+     ++IT  L
Sbjct: 176 TVTGVLAPCGCVLDRLVLTATESVWRVHDDMHAGANMDEAERAE-LAEALAAEREITLAL 234

Query: 244 VGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQALMAVSVFVVVAGLL 303
           +  ++ +   +L R IN+     L A  P V +  L  M+ V  Q L  ++  ++    L
Sbjct: 235 IRYRTPLAAVSLPRFINE--TTSLQAAAPAVEITRLLSMVGVGTQVLRGLAAVLLGVAGL 292

Query: 304 GMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTLVGILLGVSVLYLLLALA 363
            +  +L ++++ERR ++++LR +GA P  V ALL+ EA  L L+   LG+   + L AL 
Sbjct: 293 SVFIALWSAVRERRADLAMLRMLGAPPTRVAALLLCEALWLALLACALGLLAAHALTALM 352

Query: 364 APLIASQYGIQI-ALAGLTAYEWQLLGCVQLAGIVIGFIPALRAYRQSLSDGMTIR 418
             ++ +++ + I     +    W  +  V +A +V   +PA+ AYR  ++  +  R
Sbjct: 353 GEMLMARHSLAITGWQWVPGEAWVPVLAVGVA-VVAALLPAIHAYRVDVTQLLNSR 407