Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., ABC-type antimicrobial peptide transport system, ATPase component from Enterobacter asburiae PDN3

 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 98/431 (22%), Positives = 175/431 (40%), Gaps = 63/431 (14%)

Query: 5   LNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTIS--GT---DLIVG 59
           L +AW ++   K   LLT+L + I +  ++ +  +   AK+     I   GT   D+  G
Sbjct: 256 LTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPG 315

Query: 60  GRSGQVNLLLYSVFRIGN--ATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTN 117
              G          +  +  A     W +    S  PAV   + + +G+        G +
Sbjct: 316 KDFGDDEPQYQQALKYDDLAAIQKQPWVN----SATPAVSQNLRLRVGNVDVAASANGVS 371

Query: 118 HSYFEHYRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIII--AHGISDVGF 175
             YF  Y       +T S+G  FN   E + G      L      Q+    A+ + +V  
Sbjct: 372 GDYFNVYG------MTFSEGATFNA--EQLAGRAQVVVLDANSRRQLFPNKANVVGEVIL 423

Query: 176 SRHDNLPFTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSAEQLAQRDFT 235
               N+P TV+G+        +K        I  + + + +            ++ R   
Sbjct: 424 V--GNMPATVIGVAE------EKQSMFGSSKILRVWLPYTT------------ISGRIMG 463

Query: 236 PKQITAMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELW---GMMSVAEQA--- 289
              + ++ V +K    +   ++Q+     E L  +  G      W   G++  AE+    
Sbjct: 464 QSWLNSITVRVKEGYDSALAEQQL-----ERLLTLRHGKKDFFTWNMDGLLKTAEKTTRT 518

Query: 290 ----LMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLT 345
               L  V+V  +V G +G+++ +L S+ ER RE+ I  A+GAR   V    + EA ++ 
Sbjct: 519 LQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVC 578

Query: 346 LVGILLGVSVLYLLLALAAPLIASQYGIQIA-LAGLTAYEWQLLGCVQLAGIVIGFIPAL 404
           LVG  +G++ L +++A A  L    + I  + +A +TA+      C    GI+ G++PA 
Sbjct: 579 LVGGAMGIA-LSMMIAFALQLFLPGWEIGFSPVAIITAFL-----CSTFTGILFGWLPAR 632

Query: 405 RAYRQSLSDGM 415
            A R    D +
Sbjct: 633 NAARLDPVDAL 643