Pairwise Alignments

Query, 419 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., macrolide ABC transporter ATP-binding protein/permease MacB from Escherichia coli ECRC62

 Score = 58.5 bits (140), Expect = 6e-13
 Identities = 98/430 (22%), Positives = 168/430 (39%), Gaps = 61/430 (14%)

Query: 5   LNLAWKSLLNRKATALLTVLTVAIAVVLLLGVERIRTQAKESFANTIS--GT---DLIVG 59
           L +AW++L   K   LLT+L + I +  ++ +  +   AK+     I   GT   D+  G
Sbjct: 258 LTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPG 317

Query: 60  GRSGQVNLLLYSVFRIGN--ATNNIDWKSYQEFSQHPAVKWAIPISLGDSHKGFRVLGTN 117
              G  +       +  +  A     W +    S  PAV   + +   +        G +
Sbjct: 318 KDFGDDDPQYQQALKYDDLIAIQKQPWVA----SATPAVSQNLRLRYNNVDVAASANGVS 373

Query: 118 HSYFEHYRYGSKQPLTLSQGREFNGLFETVIGADVAQALGYQVGSQIIIAHGISDVG-FS 176
             YF  Y       +T S+G  FN   E + G      L      Q+   H    VG   
Sbjct: 374 GDYFNVYG------MTFSEGNTFNQ--EQLNGRAQVVVLDSNTRRQLF-PHKADVVGEVI 424

Query: 177 RHDNLPFTVVGILAPTGTPVDKTVHVSLEAIEAIHVGWESGANLGHQPSAEQLAQRDFTP 236
              N+P  V+G+        +K        +  + + + +            ++ R    
Sbjct: 425 LVGNMPARVIGVAE------EKQSMFGSSKVLRVWLPYST------------MSGRVMGQ 466

Query: 237 KQITAMLVGLKSKIQTFALQRQINDYPQEPLSAIMPGVALHELWGMMSVAEQA------- 289
             + ++ V +K    +   ++Q+       L ++  G      W M  V +         
Sbjct: 467 SWLNSITVRVKEGFDSAEAEQQLTR-----LLSLRHGKKDFFTWNMDGVLKTVEKTTRTL 521

Query: 290 ---LMAVSVFVVVAGLLGMLSSLLTSLQERRREMSILRAMGARPQHVFALLVSEASVLTL 346
              L  V+V  +V G +G+++ +L S+ ER RE+ I  A+GAR   V    + EA ++ L
Sbjct: 522 QLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCL 581

Query: 347 VGILLGVSVLYLLLALAAPLIASQYGIQIA-LAGLTAYEWQLLGCVQLAGIVIGFIPALR 405
           VG  LG++ L LL+A    L    + I  + LA L A+      C  + GI+ G++PA  
Sbjct: 582 VGGALGIT-LSLLIAFTLQLFLPGWEIGFSPLALLLAFL-----CSTVTGILFGWLPARN 635

Query: 406 AYRQSLSDGM 415
           A R    D +
Sbjct: 636 AARLDPVDAL 645